Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23080.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT1G23080.1 | CDY37101 | AT1G35670.1 | 19130088 |
| AT1G23080.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT1G23080.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41467 | Canola | plasma membrane | 94.92 | 92.81 |
| CDY25767 | Canola | plasma membrane | 83.54 | 83.25 |
| CDY12491 | Canola | plasma membrane | 82.66 | 82.23 |
| AT1G23080.1 | Thale cress | plasma membrane | 85.99 | 79.32 |
| CDY68262 | Canola | plasma membrane | 80.21 | 78.42 |
| CDX96288 | Canola | golgi, plasma membrane | 79.86 | 78.22 |
| CDY23471 | Canola | golgi, plasma membrane | 67.43 | 78.09 |
| CDX68327 | Canola | plasma membrane | 66.02 | 77.73 |
| CDY63826 | Canola | plasma membrane | 74.43 | 75.49 |
| CDY40380 | Canola | plasma membrane | 74.26 | 75.44 |
| KRH38202 | Soybean | plasma membrane | 75.48 | 67.98 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 77.06 | 67.8 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 72.68 | 67.7 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 76.36 | 66.67 |
| Solyc05g008060.2.1 | Tomato | nucleus | 76.18 | 66.62 |
| KRH50369 | Soybean | plasma membrane | 76.71 | 65.86 |
| KRG89296 | Soybean | plasma membrane | 76.18 | 65.32 |
| CDY09501 | Canola | plasma membrane | 64.45 | 65.25 |
| KRH49577 | Soybean | plasma membrane | 63.05 | 64.75 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 53.06 | 62.6 |
| CDX82059 | Canola | golgi, plasma membrane | 56.92 | 61.79 |
| CDX96484 | Canola | plasma membrane | 57.62 | 61.5 |
| GSMUA_Achr7P17140_001 | Banana | plasma membrane | 62.0 | 60.82 |
| PGSC0003DMT400015267 | Potato | cytosol | 49.39 | 60.78 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 63.22 | 59.47 |
| CDY47745 | Canola | golgi, plasma membrane | 59.37 | 59.06 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 60.6 | 58.64 |
| Os01t0643300-01 | Rice | golgi, plasma membrane, vacuole | 62.52 | 57.77 |
| Zm00001d044083_P001 | Maize | plasma membrane | 61.65 | 57.7 |
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 60.07 | 57.65 |
| CDY38263 | Canola | plasma membrane | 55.69 | 55.02 |
| CDY11886 | Canola | plasma membrane | 58.49 | 53.96 |
| EES01159 | Sorghum | golgi, plasma membrane | 61.47 | 53.75 |
| CDY53978 | Canola | plasma membrane | 55.17 | 52.85 |
| CDY20694 | Canola | plasma membrane | 58.32 | 52.44 |
| Zm00001d045219_P001 | Maize | plasma membrane | 52.89 | 51.98 |
| CDY69709 | Canola | plasma membrane | 54.64 | 51.49 |
| CDX88606 | Canola | plasma membrane | 57.97 | 51.48 |
| CDY72296 | Canola | golgi, plasma membrane | 40.81 | 51.43 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 53.42 | 51.17 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 53.42 | 51.09 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 53.42 | 50.83 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 52.89 | 50.42 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 53.77 | 50.41 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 51.66 | 49.92 |
| CDX85565 | Canola | plasma membrane | 30.47 | 48.07 |
| CDY63766 | Canola | golgi, plasma membrane | 24.87 | 47.81 |
| CDX88341 | Canola | plasma membrane | 47.46 | 47.8 |
| CDX87543 | Canola | plasma membrane | 47.46 | 47.8 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 28.9 | 47.41 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 28.9 | 47.41 |
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 28.72 | 47.13 |
| CDX69551 | Canola | endoplasmic reticulum, extracellular, vacuole | 18.04 | 45.98 |
| CDX78697 | Canola | plasma membrane | 28.72 | 41.62 |
| CDY66594 | Canola | plasma membrane | 31.52 | 40.09 |
| HORVU7Hr1G038700.9 | Barley | nucleus, plastid | 24.87 | 20.43 |
| CDX85566 | Canola | cytosol | 2.8 | 5.8 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | GO:A0A078DQU2 | InterPro:Auxin_eff_plant | EnsemblPlants:CDX91695 | ProteinID:CDX91695 |
| ProteinID:CDX91695.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| EnsemblPlantsGene:GSBRNA2T00153177001 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF36 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI0004EDCCB0 | SEG:seg | : | : | : |
Description
BnaC08g06140D
Coordinates
chrLK031869:-:253791..257134
Molecular Weight (calculated)
62408.3 Da
IEP (calculated)
8.002
GRAVY (calculated)
0.303
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYTINIR FIAADTLQKL IMLTLLTLWA NFTRSGSLEW
101: SITIFSLSTL PDTLVMGIPL LTAMYGEYSC SLMVQVVVLQ CIIWNTVLLF LFEYRGAKIL IMEQFPETAA SIVSFKVHSD VVSLDGNDLL ETDAEIGGDG
201: KLHVTVRKSN ASRRLLCCPS MTPRPSNITG AEIYSLDTTP RGSNFNHSDF YSVMGFSGGR PSNFGQSSRS QTPRPSNFEV SCGMASSPGL GYDPVTSGSY
301: PSLNAEFSSS SSSSHDANEL HKFAWGSNGG SDQGAKEIRM IVPEPPQKAE TKVTATGPRN IDFGGEEESE RVKEVATGRN KLQCNSMAEL NPKEAVETVP
401: VKHMPPASVM TRLILIMVWR KLIRNPNTYS SLIGLIWALV AFRWNVAMPR IIQQSISILS DAGLGMVMFS LGLFMALQPK LIACGNSTAT FAMAVRFLTG
501: PAVMAVAAMA IGLRGDLLRV AIVQAALPQG IMPFVFAKEY SVHPAILSTG VIFGMLIALP ITLVYYILLG L
101: SITIFSLSTL PDTLVMGIPL LTAMYGEYSC SLMVQVVVLQ CIIWNTVLLF LFEYRGAKIL IMEQFPETAA SIVSFKVHSD VVSLDGNDLL ETDAEIGGDG
201: KLHVTVRKSN ASRRLLCCPS MTPRPSNITG AEIYSLDTTP RGSNFNHSDF YSVMGFSGGR PSNFGQSSRS QTPRPSNFEV SCGMASSPGL GYDPVTSGSY
301: PSLNAEFSSS SSSSHDANEL HKFAWGSNGG SDQGAKEIRM IVPEPPQKAE TKVTATGPRN IDFGGEEESE RVKEVATGRN KLQCNSMAEL NPKEAVETVP
401: VKHMPPASVM TRLILIMVWR KLIRNPNTYS SLIGLIWALV AFRWNVAMPR IIQQSISILS DAGLGMVMFS LGLFMALQPK LIACGNSTAT FAMAVRFLTG
501: PAVMAVAAMA IGLRGDLLRV AIVQAALPQG IMPFVFAKEY SVHPAILSTG VIFGMLIALP ITLVYYILLG L
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.