Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23080.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
| AT1G23080.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 83.36 | 82.72 |
| Solyc05g008060.2.1 | Tomato | nucleus | 82.74 | 82.24 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 77.2 | 81.73 |
| CDX96288 | Canola | golgi, plasma membrane | 73.19 | 81.48 |
| CDY68262 | Canola | plasma membrane | 73.19 | 81.34 |
| CDY25767 | Canola | plasma membrane | 71.65 | 81.15 |
| CDY23471 | Canola | golgi, plasma membrane | 61.17 | 80.53 |
| CDY12491 | Canola | plasma membrane | 71.19 | 80.49 |
| KRH38202 | Soybean | plasma membrane | 78.43 | 80.28 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 74.58 | 80.27 |
| CDY63826 | Canola | plasma membrane | 69.34 | 79.93 |
| KRG89296 | Soybean | plasma membrane | 81.97 | 79.88 |
| CDX68327 | Canola | plasma membrane | 59.63 | 79.79 |
| CDY40380 | Canola | plasma membrane | 68.72 | 79.36 |
| KRH50369 | Soybean | plasma membrane | 81.2 | 79.25 |
| KRH49577 | Soybean | plasma membrane | 67.49 | 78.78 |
| AT1G23080.1 | Thale cress | plasma membrane | 75.04 | 78.68 |
| AT1G70940.1 | Thale cress | plasma membrane | 77.2 | 78.28 |
| PGSC0003DMT400015267 | Potato | cytosol | 55.47 | 77.59 |
| CDX91695 | Canola | plasma membrane | 67.8 | 77.06 |
| AT2G01420.2 | Thale cress | plasma membrane | 72.42 | 76.3 |
| CDY41467 | Canola | plasma membrane | 67.95 | 75.51 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 67.8 | 75.34 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 63.02 | 74.91 |
| Bra016173.1-P | Field mustard | plasma membrane | 68.72 | 70.57 |
| VIT_17s0000g02420.t01 | Wine grape | plasma membrane | 64.41 | 70.37 |
| VIT_08s0040g01230.t01 | Wine grape | golgi, plasma membrane | 64.56 | 70.18 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 52.08 | 69.83 |
| CDY09501 | Canola | plasma membrane | 60.4 | 69.5 |
| VIT_08s0040g01220.t01 | Wine grape | plasma membrane | 63.94 | 69.28 |
| GSMUA_Achr7P17140_001 | Banana | plasma membrane | 62.1 | 69.24 |
| Os01t0643300-01 | Rice | golgi, plasma membrane, vacuole | 65.02 | 68.28 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 63.79 | 68.2 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 60.09 | 66.1 |
| Zm00001d044083_P001 | Maize | plasma membrane | 62.1 | 66.07 |
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 59.94 | 65.38 |
| EES01159 | Sorghum | golgi, plasma membrane | 63.17 | 62.79 |
| VIT_11s0052g00440.t01 | Wine grape | plasma membrane | 59.01 | 60.79 |
| VIT_14s0108g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 32.05 | 58.26 |
| Zm00001d045219_P001 | Maize | plasma membrane | 51.77 | 57.83 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 52.54 | 57.7 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 54.08 | 57.64 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 52.23 | 56.88 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 52.54 | 56.83 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 52.08 | 56.62 |
| VIT_18s0001g15420.t01 | Wine grape | plasma membrane | 47.77 | 56.36 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 69.18 | 56.34 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 51.31 | 55.59 |
| VIT_05s0062g01120.t01 | Wine grape | plasma membrane | 38.83 | 54.43 |
| VIT_04s0023g00320.t01 | Wine grape | plasma membrane | 27.43 | 50.0 |
| VIT_04s0023g00450.t01 | Wine grape | golgi, plasma membrane | 23.27 | 41.83 |
| VIT_04s0023g00330.t01 | Wine grape | extracellular, golgi | 5.39 | 41.67 |
| HORVU7Hr1G038700.9 | Barley | nucleus, plastid | 23.73 | 22.16 |
Protein Annotations
| EntrezGene:100268124 | wikigene:100268124 | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EMBL:AM427631 | InterPro:Auxin_eff_plant |
| ProteinID:CAN66787 | ProteinID:CAN66787.1 | ProteinID:CCB50832 | ProteinID:CCB50832.1 | UniProt:F6HFI3 | EMBL:FN595752 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009926 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 |
| GO:GO:0010329 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EntrezGene:LOC100268124 | wikigene:LOC100268124 |
| InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF36 | TIGR:TC57901 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI00015C8630 | ArrayExpress:VIT_01s0011g04860 | EnsemblPlantsGene:VIT_01s0011g04860 | EnsemblPlants:VIT_01s0011g04860.t01 | unigene:Vvi.3317 |
| RefSeq:XP_002284302 | RefSeq:XP_002284302.1 | RefSeq:XP_002284319 | RefSeq:XP_002284319.1 | SEG:seg | : |
Description
Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:F6HFI3]
Coordinates
chr1:-:4474942..4478329
Molecular Weight (calculated)
70673.8 Da
IEP (calculated)
7.688
GRAVY (calculated)
0.134
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWNDLYVV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS QNNPYAMNFR FIAADTLQKI IMLVVLGIWT NFTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGPYSG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKML IMEQFPETAA SIVSFKVDSD VVSLDGRDFL QTDAEIGDDG
201: KLHVTVRKSN ASRRSLGPCS LPALTPRPSN LTGAEIYSLS SSRNPTPRGS NFNNSDFYSM MGVPGFPGRP SADLYSMQSS RGPTPRPSNF EENCAPGAQA
301: ISSPRFGFYP ANSYPAPNPE ISATVTKNAK NHLHHHQPQQ TQNQQQQPQP QSKANHDAKE LHMFVWSSSA SPVSEGGGLH VFGGTDFGAA EQSGRSDQGA
401: KEIRMLVADH PPHPQNGESK AIPEAEDFGG EDFTFVGNRG VEGEEEREKE GPIGLSKLGS SSTAELHPKM LGAPESGAGK QMPPASVMTR LILIMVWRKL
501: IRNPNTYSSL IGLVWSLIAY RWDVAMPTII KQSISILSDA GLGMAMFSLG LFMALQPRII ACGNSVATFA MAVRFLTGPA VMAAASIAVG LRGTLLHVAI
601: VQAALPQGIV PFVFAKEYNV HPAILSTAVI FGMLIALPIT LVYYILLGL
101: MITIFSLSTL PNTLVMGIPL LIAMYGPYSG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKML IMEQFPETAA SIVSFKVDSD VVSLDGRDFL QTDAEIGDDG
201: KLHVTVRKSN ASRRSLGPCS LPALTPRPSN LTGAEIYSLS SSRNPTPRGS NFNNSDFYSM MGVPGFPGRP SADLYSMQSS RGPTPRPSNF EENCAPGAQA
301: ISSPRFGFYP ANSYPAPNPE ISATVTKNAK NHLHHHQPQQ TQNQQQQPQP QSKANHDAKE LHMFVWSSSA SPVSEGGGLH VFGGTDFGAA EQSGRSDQGA
401: KEIRMLVADH PPHPQNGESK AIPEAEDFGG EDFTFVGNRG VEGEEEREKE GPIGLSKLGS SSTAELHPKM LGAPESGAGK QMPPASVMTR LILIMVWRKL
501: IRNPNTYSSL IGLVWSLIAY RWDVAMPTII KQSISILSDA GLGMAMFSLG LFMALQPRII ACGNSVATFA MAVRFLTGPA VMAAASIAVG LRGTLLHVAI
601: VQAALPQGIV PFVFAKEYNV HPAILSTAVI FGMLIALPIT LVYYILLGL
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
Arabidopsis Description
PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.