Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01159 | Sorghum | golgi, plasma membrane | 91.97 | 85.91 |
| Os01t0643300-01 | Rice | golgi, plasma membrane, vacuole | 79.84 | 78.8 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 73.44 | 75.93 |
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 72.95 | 74.79 |
| HORVU3Hr1G057630.3 | Barley | plasma membrane | 73.28 | 74.75 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 70.49 | 70.84 |
| CDY25767 | Canola | plasma membrane | 63.28 | 67.36 |
| CDY40380 | Canola | plasma membrane | 61.97 | 67.26 |
| CDY63826 | Canola | plasma membrane | 61.8 | 66.96 |
| CDY12491 | Canola | plasma membrane | 62.46 | 66.38 |
| CDY68262 | Canola | plasma membrane | 63.28 | 66.1 |
| CDX96288 | Canola | golgi, plasma membrane | 63.11 | 66.04 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 65.9 | 66.01 |
| CDY23471 | Canola | golgi, plasma membrane | 53.28 | 65.92 |
| CDX68327 | Canola | plasma membrane | 52.13 | 65.57 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 63.44 | 64.18 |
| KRH38202 | Soybean | plasma membrane | 65.57 | 63.09 |
| Zm00001d044812_P001 | Maize | plasma membrane | 62.13 | 63.06 |
| AT2G01420.2 | Thale cress | plasma membrane | 63.44 | 62.82 |
| Zm00001d018024_P001 | Maize | plasma membrane | 60.82 | 62.35 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 66.07 | 62.1 |
| Zm00001d052269_P001 | Maize | plasma membrane | 60.66 | 61.98 |
| CDX91695 | Canola | plasma membrane | 57.7 | 61.65 |
| Zm00001d045219_P001 | Maize | plasma membrane | 58.36 | 61.27 |
| AT1G23080.1 | Thale cress | plasma membrane | 61.97 | 61.07 |
| KRH49577 | Soybean | plasma membrane | 55.57 | 60.97 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 61.15 | 60.85 |
| AT1G70940.1 | Thale cress | plasma membrane | 63.44 | 60.47 |
| Zm00001d052442_P001 | Maize | plasma membrane | 56.72 | 60.38 |
| CDY41467 | Canola | plasma membrane | 57.7 | 60.27 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 57.54 | 60.1 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 64.1 | 59.79 |
| Solyc05g008060.2.1 | Tomato | nucleus | 63.93 | 59.72 |
| KRG89296 | Soybean | plasma membrane | 65.08 | 59.61 |
| KRH50369 | Soybean | plasma membrane | 64.92 | 59.55 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 51.97 | 58.06 |
| CDY09501 | Canola | plasma membrane | 52.79 | 57.09 |
| PGSC0003DMT400015267 | Potato | cytosol | 41.8 | 54.96 |
| Bra016173.1-P | Field mustard | plasma membrane | 56.39 | 54.43 |
| Zm00001d043660_P001 | Maize | plasma membrane | 31.97 | 53.87 |
| Zm00001d046893_P001 | Maize | golgi, plasma membrane, vacuole | 56.07 | 53.77 |
| Zm00001d006082_P001 | Maize | extracellular, plasma membrane, vacuole | 28.03 | 46.85 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 60.33 | 46.17 |
| Zm00001d042345_P001 | Maize | plasma membrane | 28.69 | 45.81 |
| Zm00001d043179_P001 | Maize | plasma membrane | 30.0 | 40.94 |
| Zm00001d031594_P001 | Maize | plasma membrane | 26.07 | 36.38 |
Protein Annotations
| EntrezGene:100383548 | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | ProteinID:AFK32348.1 | InterPro:Auxin_eff_plant | EMBL:BT067553 |
| UniProt:C0PGY4 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009921 | GO:GO:0009926 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | ProteinID:ONM39875.1 |
| ProteinID:ONM39876.1 | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF37 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix |
| UniParc:UPI000195CDC4 | EnsemblPlantsGene:Zm00001d044083 | EnsemblPlants:Zm00001d044083_P001 | EnsemblPlants:Zm00001d044083_T001 | SEG:seg | : |
Description
PIN-formed protein10 PIN-formed protein10
Coordinates
chr3:-:218523216..218528073
Molecular Weight (calculated)
64910.0 Da
IEP (calculated)
9.367
GRAVY (calculated)
0.320
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWNDVYTV LTAMVPLYVA MFLAYGSVRW WRIFTADQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNLR FLAADTLQKL VVLAGLAACS RLPSRLAAPR
101: LDWSITLFSV STLPNTLVMG IPLLIAMYGP YAGSLMVQVV VLQCIIWYTL LLFLFEFRAA RTLIADQFPD TAAAIASLHV DPDVVSLEGG RAETEAEVAE
201: DGRLHVTVRR SSASRRSLLM ATPRPSNLTG AEIYSMSSSR QHSPRGSNFN HADFFAMVDG APPPPAPGAR ASSFGAAELY SMHSSRGPTP RQSNFDERSA
301: SARSSRPAAV PSHDAKELHM FVWSSGASPV SDVSGLPAFT GGGAGGVNVG AKEIRMVVPA EMPQNGSAGK ENENNGAAAA ATGEAEGFGF RSGGKTTAED
401: AEAGEAAGPE QLTKLGSRYS TAELRAKDDG GGAGSAAQQM PPASVMTRLI LIMVWRKLIR NPNTYSSLIG LAWSLVAFRW HISMPAVVAK SIAILSDAGL
501: GMAMFSLGLF MALQPKLIAC GWRATGVSMA VRFLAGPAVM AAASLAIGLR GTLLRIAIVQ AALPQGIVPF VFAKEYNVHP AILSTMVIFG MMIALPITLI
601: YYILLGLKPV
101: LDWSITLFSV STLPNTLVMG IPLLIAMYGP YAGSLMVQVV VLQCIIWYTL LLFLFEFRAA RTLIADQFPD TAAAIASLHV DPDVVSLEGG RAETEAEVAE
201: DGRLHVTVRR SSASRRSLLM ATPRPSNLTG AEIYSMSSSR QHSPRGSNFN HADFFAMVDG APPPPAPGAR ASSFGAAELY SMHSSRGPTP RQSNFDERSA
301: SARSSRPAAV PSHDAKELHM FVWSSGASPV SDVSGLPAFT GGGAGGVNVG AKEIRMVVPA EMPQNGSAGK ENENNGAAAA ATGEAEGFGF RSGGKTTAED
401: AEAGEAAGPE QLTKLGSRYS TAELRAKDDG GGAGSAAQQM PPASVMTRLI LIMVWRKLIR NPNTYSSLIG LAWSLVAFRW HISMPAVVAK SIAILSDAGL
501: GMAMFSLGLF MALQPKLIAC GWRATGVSMA VRFLAGPAVM AAASLAIGLR GTLLRIAIVQ AALPQGIVPF VFAKEYNVHP AILSTMVIFG MMIALPITLI
601: YYILLGLKPV
001: MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSNARGG
401: GDDIGGLDSG EGEREIEKAT AGLNKMGSNS TAELEAAGGD GGGNNGTHMP PTSVMTRLIL IMVWRKLIRN PNTYSSLIGL IWALVAYRWH VAMPKILQQS
501: ISILSDAGLG MAMFSLGLFM ALQPKIIACG NSVATFAMAV RFITGPAIMA VAGIAIGLHG DLLRIAIVQA ALPQGIVPFV FAKEYNVHPT ILSTGVIFGM
601: LIALPITLVY YILLGL
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSNARGG
401: GDDIGGLDSG EGEREIEKAT AGLNKMGSNS TAELEAAGGD GGGNNGTHMP PTSVMTRLIL IMVWRKLIRN PNTYSSLIGL IWALVAYRWH VAMPKILQQS
501: ISILSDAGLG MAMFSLGLFM ALQPKIIACG NSVATFAMAV RFITGPAIMA VAGIAIGLHG DLLRIAIVQA ALPQGIVPFV FAKEYNVHPT ILSTGVIFGM
601: LIALPITLVY YILLGL
Arabidopsis Description
PIN4Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178VZS2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.