Factsheet for Zm00001d044812_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 18550681

plasma membrane: 23508561
plasma membrane: 27341663

gfp PMID: 18550681 doi

A Gallavotti, Y Yang, RJ Schmidt, D Jackson

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88128	Sorghum	golgi, plasma membrane	96.84	96.04
Os06t0232300-01	Rice	plasma membrane	91.51	92.91
Zm00001d018024_P001	Maize	plasma membrane	87.52	88.4
Zm00001d052269_P001	Maize	plasma membrane	81.86	82.41
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	73.88	78.03
GSMUA_Achr9P27160_001	Banana	plasma membrane	68.22	74.41
Zm00001d044083_P001	Maize	plasma membrane	63.06	62.13
Zm00001d052442_P001	Maize	plasma membrane	59.07	61.95
Zm00001d045219_P001	Maize	plasma membrane	54.58	56.45
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	59.73	56.45
Zm00001d043660_P001	Maize	plasma membrane	31.78	52.76
Zm00001d006082_P001	Maize	extracellular, plasma membrane, vacuole	27.29	44.93
Zm00001d042345_P001	Maize	plasma membrane	28.12	44.24
Zm00001d043179_P001	Maize	plasma membrane	31.45	42.28
Zm00001d031594_P001	Maize	plasma membrane	25.29	34.78

Protein Annotations

EntrezGene:103637824	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	ProteinID:ABH09242.1	ProteinID:AQL00910.1	InterPro:Auxin_eff_plant
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans
PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF19	UniProt:Q0MWY2	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI0000DBEA47	EnsemblPlantsGene:Zm00001d044812	EnsemblPlants:Zm00001d044812_P001	EnsemblPlants:Zm00001d044812_T001	SEG:seg	:

Description

PIN-formed protein1Putative auxin efflux carrier

Coordinates

chr9:-:3291763..3295059

Molecular Weight (calculated)

65198.2 Da

IEP (calculated)

8.968

GRAVY (calculated)

0.215

Length

601 amino acids

Sequence
(BLAST)

001: MITGTDFYHV MTAMVPLYVA MILAYGSVRW WRIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNIR FIAADTLQKL IVLALLTAWS YLSRRGCLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARIL ITEQFPDTAG AIASIVVDPD VVSLDGRNDA IETEAEVKED
201: GKIHVTVRRS NASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FAAGDAFGLR TGATPRPSNY EEDPQGKANK
301: YGQYPAPNPA MAAQPAKGLK KAANGQAKGE DGKDLHMFVW SSSASPVSDV FGNGAAEYND AAAVKEVRMA VASPRKVAAD GRKERGEDFA ERDDFSFGNR
401: GAAERDAEAG DEKAAAAAAA AQGNAGAVAA PAAMPPTSVM TRLILIMVWR KLIRNPNTYS SLIGLIWSLV CFRWNFEMPA IILKSISILS DAGLGMAMFS
501: LGLFMALQPR IIACGNKVAT FAMAVRFLTG PAVMAAASFA VGLRGTLLHV AIVQAALPQG IVPFVFAKEY GVHPDILSTA VIFGMLIALP ITLVYYILMG
601: L

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.