Factsheet for Os06t0232300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044812_P001	Maize	plasma membrane	92.91	91.51
EER88128	Sorghum	golgi, plasma membrane	92.74	90.59
Os02t0743400-01	Rice	plasma membrane	88.18	87.73
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	74.49	77.5
GSMUA_Achr9P27160_001	Banana	plasma membrane	69.76	74.95
Os11t0137000-01	Rice	golgi, plasma membrane	64.53	68.95
Os12t0133800-01	Rice	peroxisome, plastid	34.46	66.45
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	66.39	63.59
Os06t0660200-01	Rice	plasma membrane	61.32	57.62
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	55.24	55.33
Os01t0919800-01	Rice	plasma membrane	28.72	46.83
Os01t0802700-01	Rice	plasma membrane	31.93	44.37
Os08t0529000-01	Rice	plasma membrane	26.86	42.97
Os01t0715600-00	Rice	peroxisome, plasma membrane, plastid	32.94	40.46
Os11t0122800-00	Rice	plasma membrane	15.88	31.76
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	20.1	28.74

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	EntrezGene:4340580	EMBL:AK103208	InterPro:Auxin_eff_plant	ProteinID:BAD38156.1
ProteinID:BAF19141.1	ProteinID:BAS96925.1	ProteinID:FAA00678.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009926
GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	InterPro:Mem_trans	EnsemblPlantsGene:Os06g0232300	EnsemblPlants:Os06t0232300-01	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF19	UniProt:Q67UL3	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI00004264B6	RefSeq:XP_015641301.1
SEG:seg	:	:	:	:	:

Description

PIN PROTEIN 1ASimilar to Auxin transport protein REH1. (Os06t0232300-01)

Coordinates

chr6:+:6866393..6869521

Molecular Weight (calculated)

64326.3 Da

IEP (calculated)

9.251

GRAVY (calculated)

0.231

Length

592 amino acids

Sequence
(BLAST)

001: MITGADFYHV MTAMVPLYVA MILAYGSVKW WRIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNLR FIAADTLQKL IVLALLTLWS HLSRRGSLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGEFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARIL ITEQFPDTAG AIASIVVDAD VVSLDGRRDM IETEAEVKED
201: GKIHVTVRRS NASRSDVYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FAAGDAFGVR TGATPRPSNY EEDAAAPNKA
301: GSKYGQYPAP NPAMAAPPKP KKAANGQAKG EDGKDLHMFV WSSSASPVSD VFGNGAEYND AAAVKEVRMA VASPRKADGV ERDDFSFGNR GVAERDAEAG
401: DEKSVAAAVS GEHGKPGLTP APTAMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWSL VCFRWNFEMP AIILKSISIL SDAGLGMAMF SLGLFMALQP
501: RIIACGNKVA TFAMAVRFLT GPAVMAAASI AVGLRGTLLH VAIVQAALPQ GIVPFVFAKE YSVHPDILST AVIFGMLIAL PITLVYYILL GL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.