Factsheet for Os02t0743400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018024_P001	Maize	plasma membrane	93.28	93.28
TraesCS6A01G308600.1	Wheat	plasma membrane	91.6	92.69
TraesCS6D01G287800.1	Wheat	plasma membrane	91.43	92.36
EES05538	Sorghum	golgi, plasma membrane	93.11	91.57
Os06t0232300-01	Rice	plasma membrane	87.73	88.18
Zm00001d052269_P001	Maize	plasma membrane	87.23	86.93
HORVU6Hr1G076110.2	Barley	plasma membrane	86.22	85.36
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	74.29	77.68
GSMUA_Achr9P27160_001	Banana	plasma membrane	68.4	73.87
Os11t0137000-01	Rice	golgi, plasma membrane	64.03	68.77
TraesCS6B01G337300.3	Wheat	plasma membrane	67.23	67.23
Os12t0133800-01	Rice	peroxisome, plastid	34.45	66.78
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	66.89	64.4
Os06t0660200-01	Rice	plasma membrane	60.0	56.67
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	54.96	55.33
Os01t0919800-01	Rice	plasma membrane	28.74	47.11
Os01t0802700-01	Rice	plasma membrane	30.92	43.19
Os08t0529000-01	Rice	plasma membrane	26.72	42.97
Os01t0715600-00	Rice	peroxisome, plasma membrane, plastid	33.11	40.87
Os11t0122800-00	Rice	plasma membrane	15.46	31.08
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	20.17	28.99

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	EntrezGene:4330700	EMBL:AF056027	EMBL:AK102343	InterPro:Auxin_eff_plant
ProteinID:BAD72497.1	ProteinID:BAD72501.1	ProteinID:BAF10009.1	ProteinID:BAS80873.1	ProteinID:EEE57795.1	ProteinID:FAA00676.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009921	GO:GO:0009926	GO:GO:0009987
GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0048830
GO:GO:0055085	InterPro:Mem_trans	EnsemblPlantsGene:Os02g0743400	EnsemblPlants:Os02t0743400-01	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF19	UniProt:Q5SMQ9	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI00000A8556	RefSeq:XP_015627099.1
SEG:seg	:	:	:	:	:

Description

PIN PROTEIN 1BAuxin transport protein REH1. (Os02t0743400-01)

Coordinates

chr2:-:31158979..31161998

Molecular Weight (calculated)

64721.6 Da

IEP (calculated)

9.080

GRAVY (calculated)

0.197

Length

595 amino acids

Sequence
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WRIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNLR FIAADTLQKL MVLAMLTAWS HLSRRGSLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGEFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARML ITEQFPDTAA NIASIVVDPD VVSLDGRRDA IETETEVKED
201: GRIHVTVRRS NASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FGAADAFGVR TGATPRPSNY EDDASKPKYP
301: LPASNAAPMA GHYPAPNPAV SSAPKGAKKA ATNGQAKGED LHMFVWSSSA SPVSDVFGGG APDYNDAAAV KSPRKMDGAK DREDYVERDD FSFGNRGVMD
401: RDAEAGDEKA AAAAGADPSK AMAAPTAMPP TSVMTRLILI MVWRKLIRNP NTYSSLIGLI WSLVCFRWNF EMPAIVLKSI SILSDAGLGM AMFSLGLFMA
501: LQPHIIACGN KVATYAMAVR FLAGPAVMAA ASFAVGLRGT LLHVAIVQAA LPQGIVPFVF AKEYSVHPSI LSTAVIFGML IALPITLVYY ILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.