Factsheet for TraesCS6D01G287800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G308600.1	Wheat	plasma membrane	99.32	99.49
Os02t0743400-01	Rice	plasma membrane	92.36	91.43
HORVU6Hr1G076110.2	Barley	plasma membrane	93.21	91.35
Zm00001d018024_P001	Maize	plasma membrane	92.19	91.26
EES05538	Sorghum	golgi, plasma membrane	92.36	89.92
TraesCS7D01G191600.1	Wheat	plasma membrane	85.74	86.18
Zm00001d052269_P001	Maize	plasma membrane	86.25	85.09
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	75.21	77.86
GSMUA_Achr9P27160_001	Banana	plasma membrane	69.44	74.23
TraesCS6B01G337300.3	Wheat	plasma membrane	71.31	70.59
TraesCS4D01G125300.1	Wheat	plasma membrane	64.52	67.14
TraesCS3D01G221900.1	Wheat	plasma membrane	64.35	64.24
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	60.95	56.71
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	56.03	55.37
TraesCS3D01G247700.1	Wheat	plasma membrane	33.45	55.18
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	29.2	46.87
TraesCS3D01G421600.1	Wheat	plasma membrane	28.01	43.65
TraesCS7D01G259700.1	Wheat	plasma membrane, vacuole	27.5	42.63
TraesCS3D01G324800.1	Wheat	plasma membrane	30.39	41.53
TraesCS5D01G293300.1	Wheat	plasma membrane	25.98	40.58
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	25.81	40.32
TraesCS5D01G293100.1	Wheat	golgi, plasma membrane, vacuole	25.98	39.53
TraesCS7D01G446900.1	Wheat	plasma membrane	18.85	38.95

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009921	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0048830	GO:GO:0055085	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF19	TIGRFAMs:TIGR00946	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G287800	EnsemblPlants:TraesCS6D01G287800.1	SEG:seg

Description

No Description!

Coordinates

chr6D:+:397082345..397084736

Molecular Weight (calculated)

63867.5 Da

IEP (calculated)

8.728

GRAVY (calculated)

0.164

Length

589 amino acids

Sequence
(BLAST)

001: MITGTDFYHV MTAVVPLYVA MILAYGSVKW WGIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNLR FIAADTLQKL MMLAMLTAWS HLSRRGSLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARML ITEQFPDTAG AIASIVVDPD VVSLDGRSNA IETEAEVKED
201: GKIHVTVRRS SASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FGAADAYGVR TGATPRPSNY EEDAPKPKHP
301: APGAGHYPAP NPAVAAAPKG PKKPAANGQA KGEDLHMFVW SSSASPVSDV FGGGAPDYND AAAAKSPRKM DGAKERDDYN VERDDFSFGN RGALERDAEA
401: GDEKAMTADP NNNGMGAGPT AMPPTSVMTR LILIMVWRKL IRNPNTYSSL IGLIWSLVCF RWNFTMPAIV LGSISILSDA GLGMAMFSLG LFMALQPRII
501: ACGNKVATYA MAVRFLAGPA VMTAASFAVG LRGTLLHVAI VQAALPQGIV PFVFAKEYSV HPDILSTAVI FGMLIALPIT LVYYILLGL

Best Arabidopsis Sequence Match ( AT2G01420.1 )
(BLAST)

001: MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSGGDDI
401: GGLDSGEGER EIEKATAGLN KMGSNSTAEL EAAGGDGGGN NGTHMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWAL VAYRWHVAMP KILQQSISIL
501: SDAGLGMAMF SLGLFMALQP KIIACGNSVA TFAMAVRFIT GPAIMAVAGI AIGLHGDLLR IAIVQAALPQ GIVPFVFAKE YNVHPTILST GVIFGMLIAL
601: PITLVYYILL GL

Arabidopsis Description

PIN4Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178VZS2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.