Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G426700.1 | Wheat | plasma membrane | 97.09 | 97.35 |
| TraesCS3B01G462900.1 | Wheat | plasma membrane | 94.44 | 97.01 |
| HORVU3Hr1G094000.3 | Barley | plasma membrane | 96.3 | 95.04 |
| Os01t0919800-01 | Rice | plasma membrane | 82.28 | 85.67 |
| KXG33996 | Sorghum | plasma membrane | 83.86 | 84.31 |
| Zm00001d042345_P001 | Maize | plasma membrane | 83.6 | 82.72 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 58.99 | 69.47 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 57.94 | 67.38 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 57.94 | 62.93 |
| Bra008615.1-P | Field mustard | golgi, plasma membrane, vacuole | 57.94 | 62.93 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 57.94 | 62.93 |
| AT5G16530.1 | Thale cress | plasma membrane | 58.2 | 62.68 |
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 57.41 | 62.36 |
| VIT_04s0023g00320.t01 | Wine grape | plasma membrane | 57.94 | 61.52 |
| TraesCS5D01G291800.1 | Wheat | extracellular, plasma membrane, vacuole | 57.14 | 58.86 |
| KRH00905 | Soybean | golgi, plasma membrane, vacuole | 55.56 | 56.91 |
| KRH40330 | Soybean | golgi, plasma membrane, vacuole | 55.03 | 55.17 |
| CDX78697 | Canola | plasma membrane | 57.14 | 54.82 |
| TraesCS7D01G259700.1 | Wheat | plasma membrane, vacuole | 53.44 | 53.16 |
| TraesCS5D01G293000.1 | Wheat | golgi, plasma membrane, vacuole | 49.74 | 49.87 |
| TraesCS5D01G293100.1 | Wheat | golgi, plasma membrane, vacuole | 49.21 | 48.06 |
| TraesCS5D01G293300.1 | Wheat | plasma membrane | 47.35 | 47.48 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 38.89 | 41.18 |
| TraesCS4D01G125300.1 | Wheat | plasma membrane | 45.24 | 30.21 |
| TraesCS3D01G324800.1 | Wheat | plasma membrane | 34.39 | 30.16 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 46.3 | 29.66 |
| TraesCS7D01G191600.1 | Wheat | plasma membrane | 43.92 | 28.33 |
| TraesCS6D01G287800.1 | Wheat | plasma membrane | 43.65 | 28.01 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 43.65 | 27.68 |
| TraesCS7D01G446900.1 | Wheat | plasma membrane | 20.63 | 27.37 |
| TraesCS7D01G478800.1 | Wheat | golgi, plasma membrane, vacuole | 45.24 | 27.01 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G421600.1 | EnsemblPlantsGene:TraesCS3D01G421600 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Auxin_eff_plant | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF2 |
| PFAM:PF03547 | SEG:seg | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 |
Description
No Description!
Coordinates
chr3D:-:533871068..533875961
Molecular Weight (calculated)
40495.3 Da
IEP (calculated)
9.618
GRAVY (calculated)
0.722
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGWGDVYKV VAATAPLYFA LFLGYGSVRW WRIFTREQCD AVNRLVAFFA LPFFTFEFTL HTDPFQVNYR AVAADVISKA VIVAVIAVWA RLLGRNGGGK
101: GAAGWSITGF SLSTLTNSLV VGVPMARAMY GEWAQQLVVQ LSVFQAIVWL TFLLFVLEVR KAAIGMYVDV GRKNVVHDAA MPESPIKADV EAAAGGGAVA
201: VLVVGGAEEV GGKPSVWRLV KTVAHKLARN PNTYASFVGI TWACVANRLH MELPSVLENS VLIMSKSGTG MAMFSMGLFM AQQEKILACG PSYAALGLAL
301: KFGLGPVAMA IGSIAVGLRG DVLRVAIIQA ALPQSITSFI FAKEYGLHAD VLSTAVIFGM LVSLPLLIGL YIVLELIR
101: GAAGWSITGF SLSTLTNSLV VGVPMARAMY GEWAQQLVVQ LSVFQAIVWL TFLLFVLEVR KAAIGMYVDV GRKNVVHDAA MPESPIKADV EAAAGGGAVA
201: VLVVGGAEEV GGKPSVWRLV KTVAHKLARN PNTYASFVGI TWACVANRLH MELPSVLENS VLIMSKSGTG MAMFSMGLFM AQQEKILACG PSYAALGLAL
301: KFGLGPVAMA IGSIAVGLRG DVLRVAIIQA ALPQSITSFI FAKEYGLHAD VLSTAVIFGM LVSLPLLIGL YIVLELIR
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.