Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G287800.1 | Wheat | plasma membrane | 99.49 | 99.32 |
| HORVU6Hr1G076110.2 | Barley | plasma membrane | 93.88 | 91.85 |
| Os02t0743400-01 | Rice | plasma membrane | 92.69 | 91.6 |
| Zm00001d018024_P001 | Maize | plasma membrane | 92.69 | 91.6 |
| EES05538 | Sorghum | golgi, plasma membrane | 92.86 | 90.25 |
| TraesCS7A01G190600.1 | Wheat | plasma membrane | 85.37 | 85.52 |
| Zm00001d052269_P001 | Maize | plasma membrane | 86.39 | 85.09 |
| GSMUA_Achr7P07300_001 | Banana | golgi, plasma membrane | 75.34 | 77.86 |
| GSMUA_Achr9P27160_001 | Banana | plasma membrane | 69.56 | 74.23 |
| TraesCS6B01G337300.3 | Wheat | plasma membrane | 71.26 | 70.42 |
| TraesCS4A01G188100.1 | Wheat | plasma membrane | 64.46 | 66.73 |
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 64.46 | 63.7 |
| TraesCS7A01G492400.1 | Wheat | golgi, plasma membrane, vacuole | 60.88 | 56.65 |
| TraesCS3A01G243700.1 | Wheat | plasma membrane | 33.33 | 54.9 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 54.93 | 53.92 |
| TraesCS5A01G284500.1 | Wheat | extracellular, plasma membrane, vacuole | 29.25 | 47.12 |
| TraesCS3A01G426700.1 | Wheat | plasma membrane | 28.23 | 44.03 |
| TraesCS7A01G258800.1 | Wheat | plasma membrane, vacuole | 26.87 | 43.05 |
| TraesCS3A01G331300.1 | Wheat | plasma membrane | 30.27 | 41.2 |
| TraesCS5A01G286000.1 | Wheat | plasma membrane | 24.83 | 40.9 |
| TraesCS5A01G285700.1 | Wheat | golgi, plasma membrane, vacuole | 26.36 | 40.05 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | InterPro:Auxin_eff_plant | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009921 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0048830 | GO:GO:0055085 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 |
| PANTHER:PTHR31752:SF19 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G308600 | EnsemblPlants:TraesCS6A01G308600.1 | SEG:seg |
Description
No Description!
Coordinates
chr6A:+:543394805..543397168
Molecular Weight (calculated)
63767.4 Da
IEP (calculated)
8.728
GRAVY (calculated)
0.175
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MITGTDFYHV MTAVVPLYVA MILAYGSVKW WGIFTPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNLR FIAADTLQKL MMLAMLTAWS HLSRRGSLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARML ITEQFPDTAG AIASIVVDPD VVSLDGRSNA IETEAEVKED
201: GKIHVTVRRS SASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FGAADAYGIR TGATPRPSNY EEDAPKPKHP
301: APGAGHYPAP NPAVAAAPKG PKKPAANGQA KGEDLHMFVW SSSASPVSDV FGGGAPDYND AAAAKSPRKM DGAKERDDYN VERDDFSFGN RGALDRDAEA
401: GDEKAMTADP NNAMGAGPTA MPPTSVMTRL ILIMVWRKLI RNPNTYSSLI GLIWSLVCFR WNFTMPAIVL GSISILSDAG LGMAMFSLGL FMALQPRIIA
501: CGNKVATYAM AVRFLAGPAV MTAASFAVGL RGTLLHVAIV QAALPQGIVP FVFAKEYSVH PDILSTAVIF GMLIALPITL VYYILLGL
101: TITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARML ITEQFPDTAG AIASIVVDPD VVSLDGRSNA IETEAEVKED
201: GKIHVTVRRS SASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FGAADAYGIR TGATPRPSNY EEDAPKPKHP
301: APGAGHYPAP NPAVAAAPKG PKKPAANGQA KGEDLHMFVW SSSASPVSDV FGGGAPDYND AAAAKSPRKM DGAKERDDYN VERDDFSFGN RGALDRDAEA
401: GDEKAMTADP NNAMGAGPTA MPPTSVMTRL ILIMVWRKLI RNPNTYSSLI GLIWSLVCFR WNFTMPAIVL GSISILSDAG LGMAMFSLGL FMALQPRIIA
501: CGNKVATYAM AVRFLAGPAV MTAASFAVGL RGTLLHVAIV QAALPQGIVP FVFAKEYSVH PDILSTAVIF GMLIALPITL VYYILLGL
001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL
Arabidopsis Description
PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.