CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018024_P001	Maize	plasma membrane	95.04	96.64
Os02t0743400-01	Rice	plasma membrane	91.57	93.11
TraesCS6A01G308600.1	Wheat	plasma membrane	90.25	92.86
TraesCS6D01G287800.1	Wheat	plasma membrane	89.92	92.36
Zm00001d052269_P001	Maize	plasma membrane	88.26	89.45
EER88128	Sorghum	golgi, plasma membrane	86.45	86.3
HORVU6Hr1G076110.2	Barley	plasma membrane	84.79	85.36
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	74.38	79.09
GSMUA_Achr9P27160_001	Banana	plasma membrane	68.26	74.95
TraesCS6B01G337300.3	Wheat	plasma membrane	66.28	67.39
EES09211	Sorghum	golgi, plasma membrane	62.64	65.01
EES01159	Sorghum	golgi, plasma membrane	61.65	57.12
EER88769	Sorghum	plasma membrane	58.84	56.87
EER89254	Sorghum	golgi, plasma membrane, vacuole	54.55	55.0
EES03524	Sorghum	plasma membrane	32.23	53.87
KXG35972	Sorghum	extracellular, plasma membrane, vacuole	27.44	44.74
KXG33996	Sorghum	plasma membrane	27.6	44.41
EES03766	Sorghum	golgi, plasma membrane, vacuole	31.74	43.24
OQU80833	Sorghum	extracellular	16.03	32.44

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	UniProt:C5XYV2	EnsemblPlants:EES05538	ProteinID:EES05538
ProteinID:EES05538.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004831	GO:GO:0004832	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006412	GO:GO:0006438
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009921	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	GO:GO:0048830	GO:GO:0055085	InterPro:Mem_trans	PFAM:PF03547
PANTHER:PTHR31752	PANTHER:PTHR31752:SF19	EnsemblPlantsGene:SORBI_3004G240900	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI000220724C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:58903052..58906840

Molecular Weight (calculated)

65308.2 Da

IEP (calculated)

8.930

GRAVY (calculated)

0.233

Length

605 amino acids

Sequence
(BLAST)

001: MITATDFYHV MTAVVPLYVA MILAYGSVRW WRIFSPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNLR FIAADTLQKL MVLAMLTAWS HLSRRGSLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARLL ITEQFPDNAG AIASIVVDPD VVSLDGRRDA IETEAEVKED
201: GKIHVTVRRS NASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHND FYSMVGRSSN FGAADAFGIR TGATPRPSNY EDDAAKPAKY
301: PLPVVNAAAP VPGAAAGHYP APNPAVAAAP KKKAAGTNGQ AKGEDLHMFV WSSSASPVSD VFGGGAPDYN DAAAAVKSPR KMDGGGAKDR DDYVERDEFS
401: FGNRGAMDRD AEAGDEKAAA ATAVAGGDPN AVAAPTAMPP TSVMTRLILI MVWRKLIRNP NTYSSLIGVI WSLVCFRWNF QMPAIVLQSI SILSDAGLGM
501: AMFSLGLFMA LQPRIIACGN KVATFAMAVR FLTGPAVMAA ASFAVGLRGT LLHVAIVQAA LPQGIVPFVF AKEYNVHPDI LSTAVIFGML IALPITLVYY
601: ILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.