Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23080.1 | EES09373 | AT1G35670.1 | 19130088 |
| AT1G23080.1 | EES16732 | AT1G35670.1 | 19130088 |
| AT1G23080.1 | EES09373 | AT4G09570.1 | 19130088 |
| AT1G23080.1 | EES16732 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045219_P001 | Maize | plasma membrane | 85.17 | 87.95 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 71.83 | 72.93 |
| HORVU1Hr1G091030.2 | Barley | golgi, plasma membrane, vacuole | 69.17 | 68.37 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 67.83 | 68.29 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 67.67 | 68.01 |
| HORVU1Hr1G072970.9 | Barley | golgi, plasma membrane, vacuole | 65.17 | 66.84 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 66.33 | 66.44 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 50.5 | 62.6 |
| CDY25767 | Canola | plasma membrane | 55.83 | 58.46 |
| CDY12491 | Canola | plasma membrane | 55.5 | 58.01 |
| CDY40380 | Canola | plasma membrane | 54.33 | 58.01 |
| CDY63826 | Canola | plasma membrane | 54.33 | 57.9 |
| CDY68262 | Canola | plasma membrane | 56.33 | 57.88 |
| CDX96288 | Canola | golgi, plasma membrane | 56.17 | 57.8 |
| CDY23471 | Canola | golgi, plasma membrane | 46.33 | 56.39 |
| EES01159 | Sorghum | golgi, plasma membrane | 61.33 | 56.36 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 56.33 | 56.05 |
| CDX68327 | Canola | plasma membrane | 45.17 | 55.88 |
| KRH38202 | Soybean | plasma membrane | 58.0 | 54.89 |
| EES09211 | Sorghum | golgi, plasma membrane | 53.17 | 54.72 |
| EES05538 | Sorghum | golgi, plasma membrane | 55.0 | 54.55 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 55.67 | 54.49 |
| EER88128 | Sorghum | golgi, plasma membrane | 54.83 | 54.29 |
| AT2G01420.2 | Thale cress | plasma membrane | 55.33 | 53.9 |
| CDX91695 | Canola | plasma membrane | 50.83 | 53.42 |
| Solyc05g008060.2.1 | Tomato | nucleus | 57.83 | 53.14 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 57.83 | 53.06 |
| KRH49577 | Soybean | plasma membrane | 49.17 | 53.06 |
| AT1G23080.1 | Thale cress | plasma membrane | 54.67 | 52.99 |
| EES03524 | Sorghum | plasma membrane | 31.83 | 52.76 |
| AT1G70940.1 | Thale cress | plasma membrane | 56.17 | 52.66 |
| CDY41467 | Canola | plasma membrane | 51.17 | 52.57 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 56.83 | 52.54 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 50.83 | 52.23 |
| KRH50369 | Soybean | plasma membrane | 57.5 | 51.88 |
| KRG89296 | Soybean | plasma membrane | 57.17 | 51.5 |
| EER88769 | Sorghum | plasma membrane | 52.33 | 50.16 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 44.67 | 49.08 |
| CDY09501 | Canola | plasma membrane | 46.0 | 48.94 |
| PGSC0003DMT400015267 | Potato | cytosol | 36.67 | 47.41 |
| Bra016173.1-P | Field mustard | plasma membrane | 49.5 | 46.99 |
| KXG33996 | Sorghum | plasma membrane | 28.33 | 45.21 |
| KXG35972 | Sorghum | extracellular, plasma membrane, vacuole | 27.83 | 45.01 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 52.33 | 39.4 |
| EES03766 | Sorghum | golgi, plasma membrane, vacuole | 28.5 | 38.51 |
| OQU80833 | Sorghum | extracellular | 15.83 | 31.77 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:8071377 | InterPro:Auxin_eff_plant | UniProt:C5Z4U5 | EnsemblPlants:EER89254 |
| ProteinID:EER89254 | ProteinID:EER89254.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009926 | GO:GO:0009987 |
| GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF16 | EnsemblPlantsGene:SORBI_3010G051000 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI0001A89630 | RefSeq:XP_002437887.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:3956093..3958912
Molecular Weight (calculated)
63649.8 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.416
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWHDLYTV LCAVVPLYVA MVLAYGSVRW WGVLTPDQCA GINRFVAVFA VPLLSFHCIS TSDPYVMNLR FIAADTLQKV LVLAALAVWS YLPTARRGGA
101: AADAAAGGTN NKREPLDWSI TLFSLSTLPN TLIMGIPLLV AMYGQYSGDL LVQVVVLQCI VWYTLLLVLY EFRAARVLIA GQFPAGTAAA ACIIADVRVD
201: PDVVSLAGSQ AEAQAEVAPD GRMRLVVRRS TSAPSRRSLA AATAATPRPS NLTGVEIYSM SSSRNATPRG SSGIAHADIG WPAAAPLHGA SSLRMSSFGA
301: ADLFSLHPTP RPSSFDEQAV RARSAATVAP SNDPRDVHMI EWSSGASTTS EVRGLPVFHG GDLHRGMDSR RLVPSEVPPR AMRPGERVVT GFPADAAGQD
401: ALTKLESGST EEERKDDKDA GAGAGGQQTA AAAPAGVMMR LIVTMVWRRL IRNPNTYASV VGLTWSLISF RFHVAMPVLV KNSISILSDA GLGMAMFSLG
501: LFMATQPKII ACGNKVAAIT MAIRFLFGPA VMAATSAAIG LRGTLLRVAI VQAALPQGIV PFVFGKEYNL HAAILCTGVI FGMLIALPIT LVYYIILGLL
101: AADAAAGGTN NKREPLDWSI TLFSLSTLPN TLIMGIPLLV AMYGQYSGDL LVQVVVLQCI VWYTLLLVLY EFRAARVLIA GQFPAGTAAA ACIIADVRVD
201: PDVVSLAGSQ AEAQAEVAPD GRMRLVVRRS TSAPSRRSLA AATAATPRPS NLTGVEIYSM SSSRNATPRG SSGIAHADIG WPAAAPLHGA SSLRMSSFGA
301: ADLFSLHPTP RPSSFDEQAV RARSAATVAP SNDPRDVHMI EWSSGASTTS EVRGLPVFHG GDLHRGMDSR RLVPSEVPPR AMRPGERVVT GFPADAAGQD
401: ALTKLESGST EEERKDDKDA GAGAGGQQTA AAAPAGVMMR LIVTMVWRRL IRNPNTYASV VGLTWSLISF RFHVAMPVLV KNSISILSDA GLGMAMFSLG
501: LFMATQPKII ACGNKVAAIT MAIRFLFGPA VMAATSAAIG LRGTLLRVAI VQAALPQGIV PFVFGKEYNL HAAILCTGVI FGMLIALPIT LVYYIILGLL
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
Arabidopsis Description
PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.