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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G23080.1 PGSC0003DMT400002331 AT1G35670.1 19130088
AT1G23080.1 PGSC0003DMT400067082 AT1G35670.1 19130088
AT1G23080.1 PGSC0003DMT400002331 AT4G09570.1 19130088
AT1G23080.1 PGSC0003DMT400067082 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY23471 Canola golgi, plasma membrane 64.22 60.45
PGSC0003DMT400078330 Potato golgi, plasma membrane 84.27 59.79
CDX68327 Canola plasma membrane 61.85 59.18
Bra003938.1-P Field mustard golgi, plasma membrane 68.97 58.61
VIT_01s0011g04860.t01 Wine grape golgi, plasma membrane 77.59 55.47
PGSC0003DMT400017300 Potato plasma membrane 11.42 53.54
KRH38202 Soybean plasma membrane 72.63 53.15
KRH50369 Soybean plasma membrane 76.08 53.08
CDX96288 Canola golgi, plasma membrane 66.38 52.83
CDY25767 Canola plasma membrane 65.09 52.71
KRG89296 Soybean plasma membrane 75.65 52.7
CDY12491 Canola plasma membrane 65.09 52.61
CDY68262 Canola plasma membrane 66.16 52.57
Bra012358.1-P Field mustard golgi, plasma membrane 68.1 52.4
CDY63826 Canola plasma membrane 63.36 52.22
CDY40380 Canola plasma membrane 62.72 51.78
AT1G70940.1 Thale cress plasma membrane 71.34 51.72
AT1G23080.1 Thale cress plasma membrane 68.75 51.53
Bra016173.1-P Field mustard plasma membrane 70.04 51.42
AT2G01420.2 Thale cress plasma membrane 65.95 49.68
CDX91695 Canola plasma membrane 60.78 49.39
CDY09501 Canola plasma membrane 59.91 49.29
Bra016366.1-P Field mustard golgi, plasma membrane 60.99 48.46
CDY41467 Canola plasma membrane 60.78 48.29
KRH49577 Soybean plasma membrane 57.33 47.84
GSMUA_Achr1P25190_001 Banana golgi, plasma membrane, vacuole 59.7 45.63
PGSC0003DMT400014752 Potato golgi, plasma membrane 59.91 45.28
GSMUA_Achr7P17140_001 Banana plasma membrane 56.03 44.67
PGSC0003DMT400021600 Potato golgi, plasma membrane 57.11 44.61
Os01t0643300-01 Rice golgi, plasma membrane, vacuole 59.27 44.5
GSMUA_Achr8P29780_001 Banana golgi, plasma membrane, vacuole 45.69 43.8
PGSC0003DMT400072459 Potato golgi, plasma membrane 55.17 43.61
TraesCS3D01G221900.1 Wheat plasma membrane 55.17 43.39
TraesCS3A01G231500.1 Wheat plasma membrane 55.39 43.19
Zm00001d044083_P001 Maize plasma membrane 54.96 41.8
EES01159 Sorghum golgi, plasma membrane 56.03 39.82
PGSC0003DMT400048251 Potato plasma membrane 53.66 39.46
Os05t0576900-01 Rice golgi, plasma membrane, vacuole 48.06 37.73
TraesCS1D01G422900.1 Wheat golgi, plasma membrane, vacuole 48.06 37.42
TraesCS1B01G445400.1 Wheat golgi, plasma membrane, vacuole 47.63 37.02
Bra026669.1-P Field mustard golgi, plasma membrane 63.36 36.89
Zm00001d045219_P001 Maize plasma membrane 46.12 36.83
EER89254 Sorghum golgi, plasma membrane, vacuole 47.41 36.67
TraesCS3B01G260700.1 Wheat plasma membrane 47.63 36.29
TraesCS1A01G415400.1 Wheat golgi, plasma membrane, vacuole 46.55 36.06
PGSC0003DMT400079013 Potato plasma membrane 39.01 34.28
PGSC0003DMT400046253 Potato plasma membrane 18.97 24.79
PGSC0003DMT400003569 Potato plasma membrane 12.72 22.69
PGSC0003DMT400027309 Potato extracellular, plasma membrane, vacuole 12.93 18.69
HORVU7Hr1G038700.9 Barley nucleus, plastid 25.22 16.83
PGSC0003DMT400017301 Potato golgi, plasma membrane 0.22 0.56
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1InterPro:Auxin_eff_plantGO:GO:0005575GO:GO:0006810GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009719GO:GO:0009734GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0055085UniProt:M1A5R2InterPro:Mem_transPFAM:PF03547EnsemblPlantsGene:PGSC0003DMG400005956
PGSC:PGSC0003DMG400005956EnsemblPlants:PGSC0003DMT400015267PANTHER:PTHR31752PANTHER:PTHR31752:SF36TIGRFAMs:TIGR00946TMHMM:TMhelix
UniParc:UPI000296CDF1SEG:seg::::
Description
Auxin efflux carrier [Source:PGSC_GENE;Acc:PGSC0003DMG400005956]
Coordinates
chr4:-:2169924..2173532
Molecular Weight (calculated)
50226.1 Da
IEP (calculated)
6.847
GRAVY (calculated)
-0.120
Length
464 amino acids
Sequence
(BLAST)
001: MLIMEQFPET AGEIVSFKVE SDVVSLDGQD FLETDAELGQ DGKLHVTVRK SNVSRRSFAM TPRPSNLTGA EIYSLNSSRN PTPRGSNFNH TDFYAMMGFP
101: GRLSNFGPAD STPRPSNFEE NCTQGALTSS PKFGFYPAQS NYPAPNPEIA SIVPKNTKNQ QQLQVHSQHQ HQQQQQQNGK ASHDAKELHM FVWSSSASPV
201: SEAAGLHVFG GTDFSANEQS CQSDGAKEIR MLVSDHPQSG DNKVISQDFG GEEFSFGGDV GGGDGKNKDE KKEEKEGLTG LNTGATGVQD SGTGKQMPPA
301: SVMTRLILIM VWRKLIRNPN TYSSLIGLIW SLISYRWHVH MPKIIEKSIS ILSDAGLGMA MFSLGLFMAL QPKIIACGNT VATFAMAVRF LTGPAVMAAA
401: SIIVGLRGTL LHVAIVQAAL PQGIVPFVFA KEYNVHPAIL STAVIFGMLI ALPITLVYYI ILGL
Best Arabidopsis Sequence Match ( AT1G23080.1 )
(BLAST)
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.