Factsheet for PGSC0003DMT400078330

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23080.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT1G23080.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT1G23080.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT1G23080.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008060.2.1	Tomato	nucleus	98.93	99.08
PGSC0003DMT400015267	Potato	cytosol	59.79	84.27
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	82.72	83.36
CDY25767	Canola	plasma membrane	72.32	82.55
CDY12491	Canola	plasma membrane	72.32	82.4
CDX96288	Canola	golgi, plasma membrane	72.94	81.82
CDY68262	Canola	plasma membrane	72.78	81.51
Bra012358.1-P	Field mustard	golgi, plasma membrane	74.77	81.09
CDY40380	Canola	plasma membrane	69.57	80.96
CDY63826	Canola	plasma membrane	69.42	80.64
CDY23471	Canola	golgi, plasma membrane	60.24	79.92
AT1G23080.1	Thale cress	plasma membrane	75.38	79.64
CDX68327	Canola	plasma membrane	58.87	79.38
KRH38202	Soybean	plasma membrane	76.91	79.34
AT1G70940.1	Thale cress	plasma membrane	77.22	78.91
KRH50369	Soybean	plasma membrane	80.12	78.8
KRG89296	Soybean	plasma membrane	79.97	78.53
KRH49577	Soybean	plasma membrane	65.9	77.52
AT2G01420.2	Thale cress	plasma membrane	72.32	76.79
CDX91695	Canola	plasma membrane	66.67	76.36
Bra003938.1-P	Field mustard	golgi, plasma membrane	63.15	75.64
CDY41467	Canola	plasma membrane	66.51	74.49
Bra016366.1-P	Field mustard	golgi, plasma membrane	66.51	74.49
Bra016173.1-P	Field mustard	plasma membrane	68.96	71.36
CDY09501	Canola	plasma membrane	61.01	70.74
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	51.38	69.42
GSMUA_Achr7P17140_001	Banana	plasma membrane	60.86	68.38
PGSC0003DMT400072459	Potato	golgi, plasma membrane	61.16	68.14
PGSC0003DMT400021600	Potato	golgi, plasma membrane	61.77	68.01
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	62.84	67.71
PGSC0003DMT400014752	Potato	golgi, plasma membrane	63.46	67.59
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	63.61	67.31
TraesCS3D01G221900.1	Wheat	plasma membrane	59.79	66.27
TraesCS3A01G231500.1	Wheat	plasma membrane	59.94	65.88
Zm00001d044083_P001	Maize	plasma membrane	59.79	64.1
EES01159	Sorghum	golgi, plasma membrane	60.86	60.95
PGSC0003DMT400048251	Potato	plasma membrane	57.49	59.59
Zm00001d045219_P001	Maize	plasma membrane	52.29	58.86
TraesCS3B01G260700.1	Wheat	plasma membrane	54.28	58.29
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	52.45	58.04
EER89254	Sorghum	golgi, plasma membrane, vacuole	53.06	57.83
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	52.29	57.38
Bra026669.1-P	Field mustard	golgi, plasma membrane	69.88	57.34
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	51.99	56.95
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	51.38	56.09
PGSC0003DMT400079013	Potato	plasma membrane	44.5	55.11
PGSC0003DMT400003569	Potato	plasma membrane	21.56	54.23
PGSC0003DMT400017300	Potato	plasma membrane	8.1	53.54
PGSC0003DMT400046253	Potato	plasma membrane	25.69	47.32
PGSC0003DMT400017301	Potato	golgi, plasma membrane	12.23	45.2
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	19.72	40.19
HORVU7Hr1G038700.9	Barley	nucleus, plastid	23.7	22.3

Protein Annotations

EntrezGene:102583370	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0005575	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1CZW4	InterPro:Mem_trans	PFAM:PF03547
EnsemblPlantsGene:PGSC0003DMG400030495	PGSC:PGSC0003DMG400030495	EnsemblPlants:PGSC0003DMT400078330	PANTHER:PTHR31752	PANTHER:PTHR31752:SF36	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI000295909F	RefSeq:XP_006344239.1	SEG:seg	:	:

Description

Auxin efflux carrier [Source:PGSC_GENE;Acc:PGSC0003DMG400030495]

Coordinates

chr5:-:4249578..4253275

Molecular Weight (calculated)

71294.2 Da

IEP (calculated)

7.472

GRAVY (calculated)

0.059

Length

654 amino acids

Sequence
(BLAST)

001: MITWHDLYVV LTAVVPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIA MNNPYEMNFR FIAADSLQKV IMLVVLSLWA NLTKNGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGQDG
201: KLHVTVRKSN ASRRSFAMDH RPSNLTGAEI YSLSSSRNPT PRGSNFNHND FYSMMGFPGG RLSNFGPADM YSVQSSRGPT PRPSNFEENC APGGLVQSSP
301: RFGYFPAQQP APGSYPAPNP EISSAVPKST KPQQPNVQTQ KQEVQQQQQQ QQQQPNAKAN NHDAKELHMF VWSSSNSPVS EAGGLHVFGG NDFSANEQSG
401: RSDGAKEIRM LVSDHTQNGD SKAIPQTGEF GGEDFTFGGA NGGGKDGDEE KGEKEGPTGL TKLGSSSTSE LHPKLAGGQD AGMGKQMPPA SVMTRLILIM
501: VWRKLIRNPN TYSSLIGLIW SLISFRWHVH MPKIIEKSIS ILSDAGLGMA MFSLGLFMAL QPKIIACGNT VATFAMAVRF LTGPAVMAAA SIAVGLRGTL
601: LHVAIVQAAL PQGIVPFVFA KEYNVHPAIL STAVIFGMLI ALPITLVYYI ILGL

Best Arabidopsis Sequence Match ( AT1G70940.1 )
(BLAST)

001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL

Arabidopsis Description

PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.