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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, vacuole
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G23080.1 Os11t0171500-01 AT1G35670.1 19130088
AT1G23080.1 Os12t0169800-00 AT1G35670.1 19130088
AT1G23080.1 Os11t0171500-01 AT4G09570.1 19130088
AT1G23080.1 Os12t0169800-00 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d045219_P001 Maize plasma membrane 70.9 72.12
EER89254 Sorghum golgi, plasma membrane, vacuole 72.93 71.83
TraesCS1D01G422900.1 Wheat golgi, plasma membrane, vacuole 69.37 68.79
TraesCS1B01G445400.1 Wheat golgi, plasma membrane, vacuole 69.04 68.34
HORVU1Hr1G091030.2 Barley golgi, plasma membrane, vacuole 69.04 67.22
TraesCS1A01G415400.1 Wheat golgi, plasma membrane, vacuole 67.68 66.78
HORVU1Hr1G072970.9 Barley golgi, plasma membrane, vacuole 65.65 66.32
GSMUA_Achr8P29780_001 Banana golgi, plasma membrane, vacuole 51.44 62.81
Os01t0643300-01 Rice golgi, plasma membrane, vacuole 64.13 61.33
Os11t0137000-01 Rice golgi, plasma membrane 54.31 57.94
CDX96288 Canola golgi, plasma membrane 56.85 57.63
CDY68262 Canola plasma membrane 56.68 57.36
CDY40380 Canola plasma membrane 54.31 57.12
CDY63826 Canola plasma membrane 54.31 57.02
CDY25767 Canola plasma membrane 55.16 56.89
CDY12491 Canola plasma membrane 54.65 56.27
CDY23471 Canola golgi, plasma membrane 46.53 55.78
CDX68327 Canola plasma membrane 45.52 55.46
Os12t0133800-01 Rice peroxisome, plastid 28.76 55.37
Os06t0232300-01 Rice plasma membrane 55.33 55.24
Os02t0743400-01 Rice plasma membrane 55.33 54.96
Bra012358.1-P Field mustard golgi, plasma membrane 55.67 54.56
Solyc04g007690.2.1 Tomato plasma membrane 56.35 54.32
KRH38202 Soybean plasma membrane 58.21 54.26
AT2G01420.2 Thale cress plasma membrane 55.5 53.25
AT1G23080.1 Thale cress plasma membrane 55.33 52.83
VIT_01s0011g04860.t01 Wine grape golgi, plasma membrane 57.7 52.54
KRH49577 Soybean plasma membrane 49.41 52.52
PGSC0003DMT400078330 Potato golgi, plasma membrane 58.04 52.45
Solyc05g008060.2.1 Tomato nucleus 57.87 52.37
AT1G70940.1 Thale cress plasma membrane 56.68 52.34
KRH50369 Soybean plasma membrane 58.54 52.03
KRG89296 Soybean plasma membrane 58.38 51.8
CDX91695 Canola plasma membrane 49.92 51.66
CDY41467 Canola plasma membrane 50.42 51.03
Bra016366.1-P Field mustard golgi, plasma membrane 50.08 50.68
Os06t0660200-01 Rice plasma membrane 52.79 49.52
Bra003938.1-P Field mustard golgi, plasma membrane 45.35 49.08
CDY09501 Canola plasma membrane 46.36 48.58
Os01t0919800-01 Rice plasma membrane 29.61 48.21
PGSC0003DMT400015267 Potato cytosol 37.73 48.06
Bra016173.1-P Field mustard plasma membrane 50.76 47.47
Os08t0529000-01 Rice plasma membrane 27.92 44.59
Os01t0802700-01 Rice plasma membrane 30.46 42.25
Os01t0715600-00 Rice peroxisome, plasma membrane, plastid 31.98 39.21
Bra026669.1-P Field mustard golgi, plasma membrane 52.28 38.77
Os11t0122800-00 Rice plasma membrane 15.74 31.42
Os09t0505400-00 Rice mitochondrion, nucleus, peroxisome 18.44 26.33
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1EntrezGene:9270681ProteinID:AAT39149.1InterPro:Auxin_eff_plantProteinID:BAH93265.1
ProteinID:BAS95485.1ProteinID:FAA00682.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005886GO:GO:0006810GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009719GO:GO:0009734GO:GO:0009926GO:GO:0009987
GO:GO:0010252GO:GO:0010315GO:GO:0010329GO:GO:0016020GO:GO:0016021GO:GO:0055085
InterPro:Mem_transEnsemblPlantsGene:Os05g0576900EnsemblPlants:Os05t0576900-01PFAM:PF03547PANTHER:PTHR31752PANTHER:PTHR31752:SF16
UniProt:Q6L5F6TIGRFAMs:TIGR00946TMHMM:TMhelixUniParc:UPI0001C7C165RefSeq:XP_015638890.1SEG:seg
Description
PIN PROTEIN 10BSimilar to PIN1-like auxin transport protein. (Os05t0576900-01)
Coordinates
chr5:-:28735044..28737929
Molecular Weight (calculated)
62934.8 Da
IEP (calculated)
10.009
GRAVY (calculated)
0.435
Length
591 amino acids
Sequence
(BLAST)
001: MISWHELYMV LSAVVPLYVA MMVAYGSVRW WGVLTPEQCS GINRFVAVIA VPLLSFHFIS SSDPYAMNLR FVAADTLQKV LVLAALAAWS RFPARFVPPA
101: WPPLDCSITL FSVSTLPNTL VMGIPLLVSM YGPYSGDLMV QIVVLQSIVW YTLLLFLFEF RAARVLIAAQ FPDTAASIAA VHVDPDVVSL EGSQAEAHAE
201: VAPDGRLRMV VCRSSVSRRS AAAAATPRAS NLTGVEIYSI SSSRNATPRG STFTLADIPG HQPPNSALRA SSFGAADLFS LHSSSRQHTP RPSSFDEHAA
301: ARARASATVA PTNDLKDTHM IEWSSGASAA SEVTGLPVFR SGRETRRLVP SDAPSIASSR VIRPPPGATG GERAASFNKA VGGQDELAKL EAGAKTEQQT
401: TAVTTTTKGG GAAGAERARG QQNAPAGVML RLILTTVWRR LIRNPNTYAS LIGLTWSLIA FRFHITMPII VAKSISILSD AGLGMAMFSL GLFMATQPKI
501: IACGYSVAAA SMGVRFFFGP AIMAAASAAV GIRGTLLRIA IVQAALPQGI VPFVFAKEYN LHATILCTLV IFGMLIALPI TLVYYIILGL L
Best Arabidopsis Sequence Match ( AT1G23080.1 )
(BLAST)
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.