Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 87.95 | 85.17 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 72.12 | 70.9 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 69.88 | 68.12 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 69.54 | 67.67 |
| HORVU1Hr1G091030.2 | Barley | golgi, plasma membrane, vacuole | 69.88 | 66.89 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 68.16 | 66.11 |
| HORVU1Hr1G072970.9 | Barley | golgi, plasma membrane, vacuole | 65.4 | 64.96 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 50.6 | 60.74 |
| Zm00001d044083_P001 | Maize | plasma membrane | 61.27 | 58.36 |
| CDY25767 | Canola | plasma membrane | 56.28 | 57.07 |
| CDY68262 | Canola | plasma membrane | 57.31 | 57.02 |
| CDX96288 | Canola | golgi, plasma membrane | 57.14 | 56.95 |
| CDY40380 | Canola | plasma membrane | 55.08 | 56.94 |
| CDY63826 | Canola | plasma membrane | 55.08 | 56.84 |
| CDY12491 | Canola | plasma membrane | 55.77 | 56.45 |
| Zm00001d018024_P001 | Maize | plasma membrane | 56.97 | 55.63 |
| Zm00001d052269_P001 | Maize | plasma membrane | 57.14 | 55.61 |
| CDY23471 | Canola | golgi, plasma membrane | 47.16 | 55.58 |
| CDX68327 | Canola | plasma membrane | 45.78 | 54.85 |
| Zm00001d044812_P001 | Maize | plasma membrane | 56.45 | 54.58 |
| Bra012358.1-P | Field mustard | golgi, plasma membrane | 56.63 | 54.56 |
| KRH38202 | Soybean | plasma membrane | 58.86 | 53.94 |
| Zm00001d043660_P001 | Maize | plasma membrane | 33.56 | 53.87 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 56.63 | 53.67 |
| AT2G01420.2 | Thale cress | plasma membrane | 56.63 | 53.41 |
| CDX91695 | Canola | plasma membrane | 51.98 | 52.89 |
| AT1G23080.1 | Thale cress | plasma membrane | 56.11 | 52.67 |
| Zm00001d052442_P001 | Maize | plasma membrane | 51.81 | 52.53 |
| KRH49577 | Soybean | plasma membrane | 50.26 | 52.52 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 58.86 | 52.29 |
| Solyc05g008060.2.1 | Tomato | nucleus | 58.69 | 52.22 |
| AT1G70940.1 | Thale cress | plasma membrane | 57.49 | 52.19 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 57.83 | 51.77 |
| CDY41467 | Canola | plasma membrane | 51.98 | 51.71 |
| Bra016366.1-P | Field mustard | golgi, plasma membrane | 51.64 | 51.37 |
| KRH50369 | Soybean | plasma membrane | 58.52 | 51.13 |
| KRG89296 | Soybean | plasma membrane | 58.35 | 50.9 |
| Bra003938.1-P | Field mustard | golgi, plasma membrane | 45.78 | 48.72 |
| Zm00001d046893_P001 | Maize | golgi, plasma membrane, vacuole | 53.01 | 48.43 |
| CDY09501 | Canola | plasma membrane | 46.47 | 47.87 |
| Bra016173.1-P | Field mustard | plasma membrane | 50.26 | 46.2 |
| PGSC0003DMT400015267 | Potato | cytosol | 36.83 | 46.12 |
| Zm00001d006082_P001 | Maize | extracellular, plasma membrane, vacuole | 28.57 | 45.48 |
| Zm00001d042345_P001 | Maize | plasma membrane | 29.78 | 45.29 |
| Zm00001d043179_P001 | Maize | plasma membrane | 29.95 | 38.93 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 53.36 | 38.9 |
| Zm00001d031594_P001 | Maize | plasma membrane | 26.16 | 34.78 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | ProteinID:AFK32349.1 | ProteinID:AQL01859.1 | InterPro:Auxin_eff_plant | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | UniProt:I3RWW1 | InterPro:Mem_trans |
| PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF16 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | UniParc:UPI000220C4FF |
| EnsemblPlantsGene:Zm00001d045219 | EnsemblPlants:Zm00001d045219_P001 | EnsemblPlants:Zm00001d045219_T001 | SEG:seg | : | : |
Description
PIN-formed protein12 PIN-formed protein12
Coordinates
chr9:+:16477975..16480410
Molecular Weight (calculated)
61843.7 Da
IEP (calculated)
8.943
GRAVY (calculated)
0.430
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWHDLYTV LCAVVPLYVA MILAYGSVQW WGVLTPDQCS GINRFVAVFA VPLLSFHCIS ASNPYVMNLR FIAADTLQKV LVLAALAVWS HLPPARGCGG
101: GTKLREPFDW SITLFSLSTL PNTLIMGIPL VVAMYGRYSG DLLVQVVVLQ CIVWYTLLLV LYEFRAARVL IAGQCPDGAA ARIADVRVDP DVVSLCGSQA
201: EAEAEVAPDG RVRLVVRRST SASRRSLATP RPSNLAGVEI YSVSSSRNAT PRGSSGIAHA DAICAAAPPP HGASSLRMSS FGAADLFSLH PTPRPSSFEE
301: QAVRARSAAA VAPSNDPRDA HMFEWSSGAS ATSEVRGLPV FHGGDIHRGM DPRRLVPSEA PPRAMRPGER VVTGYPADAG QDIVLAKLES GSTEAERKDA
401: CGRDGGAGEQ QAAAPAGVMM RLIVTMVWRR LIRNPNTYAS VVGLTWSLIS FRFHFAMPAI VKNSITILSD AGLGMAMFSL GLFMALQPKI IACGNTVAAV
501: TMAIRFFLGP AVMAATSAAV GLRGTLLRVA VVQAALPQGI VPFVFAREYS LHATILSTGV IFGMLIALPI GLVYYVVLGL L
101: GTKLREPFDW SITLFSLSTL PNTLIMGIPL VVAMYGRYSG DLLVQVVVLQ CIVWYTLLLV LYEFRAARVL IAGQCPDGAA ARIADVRVDP DVVSLCGSQA
201: EAEAEVAPDG RVRLVVRRST SASRRSLATP RPSNLAGVEI YSVSSSRNAT PRGSSGIAHA DAICAAAPPP HGASSLRMSS FGAADLFSLH PTPRPSSFEE
301: QAVRARSAAA VAPSNDPRDA HMFEWSSGAS ATSEVRGLPV FHGGDIHRGM DPRRLVPSEA PPRAMRPGER VVTGYPADAG QDIVLAKLES GSTEAERKDA
401: CGRDGGAGEQ QAAAPAGVMM RLIVTMVWRR LIRNPNTYAS VVGLTWSLIS FRFHFAMPAI VKNSITILSD AGLGMAMFSL GLFMALQPKI IACGNTVAAV
501: TMAIRFFLGP AVMAATSAAV GLRGTLLRVA VVQAALPQGI VPFVFAREYS LHATILSTGV IFGMLIALPI GLVYYVVLGL L
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.