Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63826 | Canola | plasma membrane | 84.58 | 92.54 |
| CDY40380 | Canola | plasma membrane | 84.42 | 92.53 |
| AT1G23080.1 | Thale cress | plasma membrane | 78.08 | 77.71 |
| AT1G70940.1 | Thale cress | plasma membrane | 79.22 | 76.25 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 76.3 | 72.42 |
| PGSC0003DMT400078330 | Potato | golgi, plasma membrane | 76.79 | 72.32 |
| Solyc05g008060.2.1 | Tomato | nucleus | 76.62 | 72.28 |
| Solyc04g007690.2.1 | Tomato | plasma membrane | 71.59 | 71.94 |
| KRH38202 | Soybean | plasma membrane | 73.54 | 71.45 |
| KRH50369 | Soybean | plasma membrane | 75.97 | 70.38 |
| KRG89296 | Soybean | plasma membrane | 75.97 | 70.27 |
| KRH49577 | Soybean | plasma membrane | 62.66 | 69.42 |
| Bra026669.1-P | Field mustard | golgi, plasma membrane | 87.18 | 67.38 |
| GSMUA_Achr8P29780_001 | Banana | golgi, plasma membrane, vacuole | 52.44 | 66.74 |
| PGSC0003DMT400015267 | Potato | cytosol | 49.68 | 65.95 |
| GSMUA_Achr7P17140_001 | Banana | plasma membrane | 61.2 | 64.78 |
| GSMUA_Achr1P25190_001 | Banana | golgi, plasma membrane, vacuole | 63.31 | 64.25 |
| Os01t0643300-01 | Rice | golgi, plasma membrane, vacuole | 63.8 | 63.59 |
| Zm00001d044083_P001 | Maize | plasma membrane | 62.82 | 63.44 |
| TraesCS3D01G221900.1 | Wheat | plasma membrane | 60.39 | 63.05 |
| TraesCS3A01G231500.1 | Wheat | plasma membrane | 60.55 | 62.69 |
| AT1G73590.1 | Thale cress | plasma membrane | 60.55 | 59.97 |
| EES01159 | Sorghum | golgi, plasma membrane | 62.18 | 58.65 |
| AT5G57090.1 | Thale cress | golgi, plasma membrane, vacuole | 60.06 | 57.19 |
| Zm00001d045219_P001 | Maize | plasma membrane | 53.41 | 56.63 |
| Os05t0576900-01 | Rice | golgi, plasma membrane, vacuole | 53.25 | 55.5 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 53.9 | 55.33 |
| TraesCS1D01G422900.1 | Wheat | golgi, plasma membrane, vacuole | 53.41 | 55.2 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 53.25 | 54.94 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 53.9 | 54.52 |
| TraesCS1A01G415400.1 | Wheat | golgi, plasma membrane, vacuole | 52.6 | 54.09 |
| AT5G15100.1 | Thale cress | plasma membrane | 30.84 | 51.77 |
| AT5G16530.1 | Thale cress | plasma membrane | 28.41 | 49.86 |
| AT1G77110.1 | Thale cress | plasma membrane | 45.13 | 48.77 |
| HORVU7Hr1G038700.9 | Barley | nucleus, plastid | 23.38 | 20.72 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:814670 | UniProt:A0A178VZS2 | ProteinID:AAC67319.2 | ProteinID:AAM15143.1 |
| ProteinID:AEC05448.1 | ProteinID:AEC05449.1 | EMBL:AF087016 | ArrayExpress:AT2G01420 | EnsemblPlantsGene:AT2G01420 | RefSeq:AT2G01420 |
| TAIR:AT2G01420 | RefSeq:AT2G01420-TAIR-G | EnsemblPlants:AT2G01420.2 | TAIR:AT2G01420.2 | EMBL:AY091009 | InterPro:Auxin_eff_plant |
| EMBL:BT008691 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009926 | GO:GO:0009987 |
| GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0048364 |
| GO:GO:0055085 | InterPro:Mem_trans | RefSeq:NP_565261.1 | RefSeq:NP_849923.1 | ProteinID:OAP11326.1 | PFAM:PF03547 |
| Symbol:PIN4 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000256 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0006081 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020149 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF36 | UniProt:Q8RWZ6 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix |
| UniParc:UPI00000484CD | SEG:seg | : | : | : | : |
Description
PIN4Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178VZS2]
Coordinates
chr2:-:180033..183764
Molecular Weight (calculated)
66746.0 Da
IEP (calculated)
6.915
GRAVY (calculated)
0.198
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSNARGG
401: GDDIGGLDSG EGEREIEKAT AGLNKMGSNS TAELEAAGGD GGGNNGTHMP PTSVMTRLIL IMVWRKLIRN PNTYSSLIGL IWALVAYRWH VAMPKILQQS
501: ISILSDAGLG MAMFSLGLFM ALQPKIIACG NSVATFAMAV RFITGPAIMA VAGIAIGLHG DLLRIAIVQA ALPQGIVPFV FAKEYNVHPT ILSTGVIFGM
601: LIALPITLVY YILLGL
101: MITIFSLSTL PNTLVMGIPL LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV
301: PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSNARGG
401: GDDIGGLDSG EGEREIEKAT AGLNKMGSNS TAELEAAGGD GGGNNGTHMP PTSVMTRLIL IMVWRKLIRN PNTYSSLIGL IWALVAYRWH VAMPKILQQS
501: ISILSDAGLG MAMFSLGLFM ALQPKIIACG NSVATFAMAV RFITGPAIMA VAGIAIGLHG DLLRIAIVQA ALPQGIVPFV FAKEYNVHPT ILSTGVIFGM
601: LIALPITLVY YILLGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.