Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88341 | Canola | plasma membrane | 88.07 | 88.54 |
| CDX87543 | Canola | plasma membrane | 87.72 | 88.18 |
| Bra015694.1-P | Field mustard | plasma membrane | 88.07 | 87.46 |
| VIT_18s0001g15420.t01 | Wine grape | plasma membrane | 69.3 | 71.82 |
| Solyc06g059730.1.1 | Tomato | plasma membrane | 65.09 | 71.35 |
| PGSC0003DMT400079013 | Potato | plasma membrane | 65.79 | 71.02 |
| KRH18110 | Soybean | extracellular | 15.61 | 70.63 |
| KRH15941 | Soybean | plasma membrane | 64.74 | 69.49 |
| KRH18109 | Soybean | plasma membrane | 41.93 | 68.29 |
| GSMUA_Achr3P22010_001 | Banana | plasma membrane | 52.98 | 59.57 |
| GSMUA_Achr8P08300_001 | Banana | plasma membrane | 59.65 | 59.44 |
| AT1G73590.1 | Thale cress | plasma membrane | 50.7 | 46.46 |
| AT5G15100.1 | Thale cress | plasma membrane | 29.65 | 46.05 |
| AT1G23080.1 | Thale cress | plasma membrane | 49.65 | 45.72 |
| AT2G01420.2 | Thale cress | plasma membrane | 48.77 | 45.13 |
| AT5G16530.1 | Thale cress | plasma membrane | 27.72 | 45.01 |
| AT1G70940.1 | Thale cress | plasma membrane | 50.18 | 44.69 |
| AT5G57090.1 | Thale cress | golgi, plasma membrane, vacuole | 49.82 | 43.89 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:844046 | UniProt:A0A178W8W8 | ProteinID:AAC00629.1 | ProteinID:AEE35936.1 |
| EMBL:AF087819 | ProteinID:ANM60755.1 | ArrayExpress:AT1G77110 | EnsemblPlantsGene:AT1G77110 | RefSeq:AT1G77110 | TAIR:AT1G77110 |
| RefSeq:AT1G77110-TAIR-G | EnsemblPlants:AT1G77110.1 | TAIR:AT1G77110.1 | InterPro:Auxin_eff_plant | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009791 | GO:GO:0009926 | GO:GO:0009987 |
| GO:GO:0010105 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0010540 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0048767 | GO:GO:0055085 |
| GO:GO:1901332 | InterPro:Mem_trans | RefSeq:NP_001323018.1 | RefSeq:NP_177836.1 | ProteinID:OAP14778.1 | PFAM:PF03547 |
| Symbol:PIN6 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF8 | UniProt:Q9SQH6 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI000004849B | SEG:seg | : | : | : |
Description
PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
Coordinates
chr1:+:28970714..28974805
Molecular Weight (calculated)
62047.4 Da
IEP (calculated)
9.479
GRAVY (calculated)
0.359
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.