Factsheet for Bra015694.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87543	Canola	plasma membrane	98.78	100.0
AT1G77110.1	Thale cress	plasma membrane	87.46	88.07
VIT_18s0001g15420.t01	Wine grape	plasma membrane	66.9	69.82
Solyc06g059730.1.1	Tomato	plasma membrane	63.24	69.81
PGSC0003DMT400079013	Potato	plasma membrane	63.94	69.51
KRH18110	Soybean	extracellular	15.16	69.05
KRH15941	Soybean	plasma membrane	61.32	66.29
KRH18109	Soybean	plasma membrane	40.07	65.71
GSMUA_Achr3P22010_001	Banana	plasma membrane	51.39	58.19
GSMUA_Achr8P08300_001	Banana	plasma membrane	57.84	58.04
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	29.27	48.28
Bra008105.1-P	Field mustard	golgi, plasma membrane	50.0	46.59
Bra012358.1-P	Field mustard	golgi, plasma membrane	48.78	46.43
Bra002763.1-P	Field mustard	plasma membrane	48.08	46.39
Bra015983.1-P	Field mustard	plasma membrane	49.65	46.12
Bra016366.1-P	Field mustard	golgi, plasma membrane	46.69	45.89
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	26.83	45.16
Bra006834.1-P	Field mustard	plasma membrane	48.26	43.15
Bra035648.1-P	Field mustard	plasma membrane	48.61	42.21
Bra003938.1-P	Field mustard	golgi, plasma membrane	38.33	40.29
Bra016173.1-P	Field mustard	plasma membrane	43.9	39.87
Bra026669.1-P	Field mustard	golgi, plasma membrane	47.39	34.13
Bra023503.1-P	Field mustard	golgi, plasma membrane	24.22	23.28

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra015694	EnsemblPlants:Bra015694.1	EnsemblPlants:Bra015694.1-P
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009719	GO:GO:0009734	GO:GO:0009791
GO:GO:0009926	GO:GO:0009987	GO:GO:0010105	GO:GO:0010540	GO:GO:0016020	GO:GO:0016021
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0055085	GO:GO:1901332
UniProt:M4DGR9	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF8	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0002541A92	SEG:seg	:	:	:

Description

AT1G77110 (E=6e-270) PIN6 | PIN6 (PIN-FORMED 6); auxin:hydrogen symporter/ transporter

Coordinates

chrA07:+:21324361..21327418

Molecular Weight (calculated)

62674.2 Da

IEP (calculated)

9.108

GRAVY (calculated)

0.411

Length

574 amino acids

Sequence
(BLAST)

001: MITGSEFYKV MCAMAPLYFA MFVAYGSVKW WKIFTAEQCS GINRFVSVFA VPILSFHFIS QNNPYKMDMM FIIADTLSKV MVFVLLSLWA ILFKSGGLDW
101: LITLFSVATL PNTLVMGIPL LQAMYGEYTQ NLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRTEFPGQAA GAITRIQVDD DVISLDGMDP LRTETETDIN
201: GRVRLRIRRS ISSVPDSVVS SSLCLTPRAS NLSNAEIFSV NTPNRFFNGG GGSGALQFYN GNNEIMFCNG DLGGFGFTRP GCGVSPRRLS GYASSDAYSL
301: QPTPRASNFN ELDVNGAGTP VWMKSPVAGR IYRHTASPKM TWESGQRHVA KDTINDDYVS IPEKEISFRD ALRAAPPPTA AGVACSMEEG AAGKETAPVA
401: PIGRQEMPSA ALMVRLILTV VGRKLSRNPN TYSSIIGLVW SLISFRWNIA LPDIVAFSIK IISDAGLGMA MFSLGLFMAL QPKMITCGVK KATVGMLIRF
501: ILGPAFMAAA SVIVGLKGSR LHAAIVQAAL PQGIVPFVFA REYGLHPDLL STLVIFGMIV SLPVTILYYV LLGL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.