Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra015694.1-P Field mustard plasma membrane 100.0 98.78
CDX88341 Canola plasma membrane 97.88 97.88
AT1G77110.1 Thale cress plasma membrane 88.18 87.72
VIT_18s0001g15420.t01 Wine grape plasma membrane 67.72 69.82
Solyc06g059730.1.1 Tomato plasma membrane 64.02 69.81
PGSC0003DMT400079013 Potato plasma membrane 64.73 69.51
KRH18110 Soybean extracellular 15.34 69.05
KRH15941 Soybean plasma membrane 62.08 66.29
KRH18109 Soybean plasma membrane 40.56 65.71
GSMUA_Achr3P22010_001 Banana plasma membrane 52.03 58.19
GSMUA_Achr8P08300_001 Banana plasma membrane 58.55 58.04
CDX82059 Canola golgi, plasma membrane 48.32 52.09
CDX96484 Canola plasma membrane 47.97 50.84
CDY47745 Canola golgi, plasma membrane 49.56 48.95
CDY40380 Canola plasma membrane 48.32 48.75
CDX69445 Canola golgi, plasma membrane, vacuole 29.63 48.28
CDY67254 Canola golgi, plasma membrane, vacuole 29.63 48.28
CDY25767 Canola plasma membrane 48.68 48.17
CDY63826 Canola plasma membrane 47.8 48.13
CDX96288 Canola golgi, plasma membrane 49.38 48.03
CDY68262 Canola plasma membrane 49.38 47.95
CDY38263 Canola plasma membrane 48.68 47.75
CDY12491 Canola plasma membrane 48.32 47.74
CDY23471 Canola golgi, plasma membrane 41.45 47.67
CDX91695 Canola plasma membrane 47.8 47.46
CDX68327 Canola plasma membrane 40.56 47.42
CDX70699 Canola golgi, plasma membrane, vacuole 29.1 47.41
CDY41467 Canola plasma membrane 47.44 46.06
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 18.17 45.98
CDY11886 Canola plasma membrane 49.21 45.07
CDY53978 Canola plasma membrane 47.09 44.8
CDY63766 Canola golgi, plasma membrane 22.93 43.77
CDX85565 Canola plasma membrane 27.87 43.65
CDY20694 Canola plasma membrane 48.85 43.62
CDY69709 Canola plasma membrane 46.21 43.23
CDX88606 Canola plasma membrane 48.5 42.77
CDY09501 Canola plasma membrane 41.98 42.2
CDX78697 Canola plasma membrane 29.28 42.13
CDY72296 Canola golgi, plasma membrane 33.33 41.72
CDY66594 Canola plasma membrane 29.45 37.19
CDX85566 Canola cytosol 2.29 4.71
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1GO:A0A078DJZ8InterPro:Auxin_eff_plantEnsemblPlants:CDX87543ProteinID:CDX87543
ProteinID:CDX87543.1GO:GO:0005575GO:GO:0006810GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0009719GO:GO:0009734GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00146535001InterPro:Mem_transPFAM:PF03547PANTHER:PTHR31752PANTHER:PTHR31752:SF8TIGRFAMs:TIGR00946
TMHMM:TMhelixUniParc:UPI0004EE7D65SEG:seg:::
Description
BnaA07g33300D
Coordinates
chrLK031850:-:1124267..1127609
Molecular Weight (calculated)
61884.4 Da
IEP (calculated)
9.384
GRAVY (calculated)
0.420
Length
567 amino acids
Sequence
(BLAST)
001: MITGSEFYKV MCAMAPLYFA MFVAYGSVKW WKIFTAEQCS GINRFVSVFA VPILSFHFIS QNNPYKMDMM FIIADTLSKV MVFVLLSLWA ILFKSGGLDW
101: LITLFSVATL PNTLVMGIPL LQAMYGEYTQ NLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRTEFPGQAA GAITRIQVDD DVISLDGMDP LRTETETDIN
201: GRVRLRIRRS ISSVPDSVVS SSLCLTPRAS NLSNAEIFSV NTPNRFFNGG GGSGALQFYN GNNEIMFCNG DLGGFGFTRP GCGVSPRRLS GYASSDAYSL
301: QPTPRASNFN ELDVNGAGTP VWMKSPVAGR IYRHTASPKM TWESGQRHVA KDTINEKEIS FRDALRAAPP PTAAGVACSM EEGAAGKETA PVAPIGRQEM
401: PSAALMVRLI LTVVGRKLSR NPNTYSSIIG LVWSLISFRW NIALPDIVAF SIKIISDAGL GMAMFSLGLF MALQPKMITC GVKKATVGML IRFILGPAFM
501: AAASVIVGLK GSRLHAAIVQ AALPQGIVPF VFAREYGLHP DLLSTLVIFG MIVSLPVTIL YYVLLGL
Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)
001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL
Arabidopsis Description
PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.