Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008722.1-P | Field mustard | golgi, plasma membrane, vacuole | 98.21 | 64.52 |
| CDX85565 | Canola | plasma membrane | 83.48 | 51.66 |
| AT5G15100.1 | Thale cress | plasma membrane | 79.46 | 48.5 |
| CDY66594 | Canola | plasma membrane | 95.98 | 47.88 |
| CDY63766 | Canola | golgi, plasma membrane | 58.93 | 44.44 |
| PGSC0003DMT400003569 | Potato | plasma membrane | 44.2 | 38.08 |
| VIT_14s0108g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 56.25 | 35.29 |
| HORVU3Hr1G067670.3 | Barley | plasma membrane | 55.8 | 35.01 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 55.36 | 34.73 |
| TraesCS3B01G276500.1 | Wheat | plasma membrane | 55.36 | 34.73 |
| TraesCS3A01G243700.1 | Wheat | plasma membrane | 55.36 | 34.73 |
| Zm00001d043660_P001 | Maize | plasma membrane | 54.91 | 33.98 |
| EES03524 | Sorghum | plasma membrane | 54.91 | 33.98 |
| Solyc02g087660.2.1 | Tomato | plasma membrane | 53.57 | 33.61 |
| KRH40132 | Soybean | plasma membrane | 53.57 | 33.52 |
| KRH01128 | Soybean | plasma membrane | 52.23 | 32.59 |
| KRH58174 | Soybean | endoplasmic reticulum, plasma membrane | 52.23 | 32.32 |
| KRH04363 | Soybean | endoplasmic reticulum, plasma membrane | 52.23 | 32.23 |
| Os01t0715600-00 | Rice | peroxisome, plasma membrane, plastid | 55.36 | 25.73 |
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 35.27 | 22.7 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 34.82 | 22.41 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 34.82 | 22.41 |
| CDX78697 | Canola | plasma membrane | 35.71 | 20.3 |
| CDX82059 | Canola | golgi, plasma membrane | 45.98 | 19.58 |
| CDX96484 | Canola | plasma membrane | 46.43 | 19.44 |
| CDY63826 | Canola | plasma membrane | 47.77 | 19.01 |
| CDX96288 | Canola | golgi, plasma membrane | 49.11 | 18.87 |
| CDY40380 | Canola | plasma membrane | 47.32 | 18.86 |
| CDY68262 | Canola | plasma membrane | 49.11 | 18.84 |
| CDY25767 | Canola | plasma membrane | 47.77 | 18.67 |
| CDY12491 | Canola | plasma membrane | 46.88 | 18.29 |
| CDX88341 | Canola | plasma membrane | 45.98 | 18.17 |
| CDX87543 | Canola | plasma membrane | 45.98 | 18.17 |
| CDX91695 | Canola | plasma membrane | 45.98 | 18.04 |
| CDY38263 | Canola | plasma membrane | 46.43 | 17.99 |
| CDY47745 | Canola | golgi, plasma membrane | 45.98 | 17.94 |
| CDY41467 | Canola | plasma membrane | 45.98 | 17.64 |
| CDY53978 | Canola | plasma membrane | 46.43 | 17.45 |
| CDY11886 | Canola | plasma membrane | 46.43 | 16.8 |
| CDY72296 | Canola | golgi, plasma membrane | 33.48 | 16.56 |
| CDY69709 | Canola | plasma membrane | 44.64 | 16.5 |
| CDX68327 | Canola | plasma membrane | 35.27 | 16.29 |
| CDX88606 | Canola | plasma membrane | 46.43 | 16.17 |
| CDY20694 | Canola | plasma membrane | 45.54 | 16.06 |
| CDY23471 | Canola | golgi, plasma membrane | 35.27 | 16.02 |
| CDY09501 | Canola | plasma membrane | 34.82 | 13.83 |
| CDX85566 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX69551 | EnsemblPlantsGene:GSBRNA2T00135557001 | GO:A0A078BXT0 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF10 |
| PFAM:PF03547 | ProteinID:CDX69551 | ProteinID:CDX69551.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE16B5 |
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | : | : | : | : |
Description
BnaA10g19000D
Coordinates
chrLK031790:+:774380..775604
Molecular Weight (calculated)
24682.9 Da
IEP (calculated)
10.106
GRAVY (calculated)
0.787
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWLDVYHV FSATVPLYVA MILGYLSAKH LNIFSLEQCA GINKFVAKFS VPLLSFQVIS QNNPFKMSPR LILSDILQKI FAFVVLAVVL RFWHPTGGRG
101: GKLGWIITGL SVSVLPNTLI LGIPILSAID GDAAVNILVQ IVVLQSLIWY NILLFLFEIN AARKITSSGA SIEHRALFGL VWATLHFRLG WKLPEMIGKS
201: VHMISDGGLG MAMFSLGNHS IYSI
101: GKLGWIITGL SVSVLPNTLI LGIPILSAID GDAAVNILVQ IVVLQSLIWY NILLFLFEIN AARKITSSGA SIEHRALFGL VWATLHFRLG WKLPEMIGKS
201: VHMISDGGLG MAMFSLGNHS IYSI
001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
Arabidopsis Description
PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.