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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 47.88 95.98
CDY63766 Canola golgi, plasma membrane 56.57 85.52
CDX85565 Canola plasma membrane 68.6 85.08
AT5G15100.1 Thale cress plasma membrane 67.26 82.29
PGSC0003DMT400003569 Potato plasma membrane 34.74 60.0
VIT_14s0108g00020.t01 Wine grape endoplasmic reticulum, plasma membrane 47.22 59.38
Solyc02g087660.2.1 Tomato plasma membrane 46.77 58.82
KRH40132 Soybean plasma membrane 44.99 56.42
KRH01128 Soybean plasma membrane 43.88 54.87
TraesCS3A01G243700.1 Wheat plasma membrane 42.98 54.06
EES03524 Sorghum plasma membrane 43.43 53.87
HORVU3Hr1G067670.3 Barley plasma membrane 42.76 53.78
TraesCS3D01G247700.1 Wheat plasma membrane 42.76 53.78
TraesCS3B01G276500.1 Wheat plasma membrane 42.76 53.78
KRH58174 Soybean endoplasmic reticulum, plasma membrane 43.21 53.59
KRH04363 Soybean endoplasmic reticulum, plasma membrane 42.98 53.17
Zm00001d043660_P001 Maize plasma membrane 42.76 53.04
CDX70699 Canola golgi, plasma membrane, vacuole 30.29 39.08
Os01t0715600-00 Rice peroxisome, plasma membrane, plastid 41.87 39.0
CDY67254 Canola golgi, plasma membrane, vacuole 29.84 38.51
CDX69445 Canola golgi, plasma membrane, vacuole 29.84 38.51
CDX78697 Canola plasma membrane 30.73 35.03
CDX82059 Canola golgi, plasma membrane 39.2 33.46
CDX96484 Canola plasma membrane 39.64 33.27
CDY25767 Canola plasma membrane 41.43 32.46
CDY63826 Canola plasma membrane 40.53 32.33
CDY12491 Canola plasma membrane 41.2 32.23
CDY40380 Canola plasma membrane 40.31 32.21
CDX68327 Canola plasma membrane 34.74 32.16
CDX96288 Canola golgi, plasma membrane 41.65 32.08
CDY68262 Canola plasma membrane 41.65 32.02
CDY23471 Canola golgi, plasma membrane 34.74 31.64
CDX91695 Canola plasma membrane 40.09 31.52
CDY38263 Canola plasma membrane 39.64 30.8
CDY47745 Canola golgi, plasma membrane 38.98 30.49
CDY41467 Canola plasma membrane 39.64 30.48
CDY53978 Canola plasma membrane 39.2 29.53
CDX87543 Canola plasma membrane 37.19 29.45
CDX88341 Canola plasma membrane 37.19 29.45
CDY11886 Canola plasma membrane 39.87 28.92
CDX88606 Canola plasma membrane 39.87 27.84
CDY09501 Canola plasma membrane 34.97 27.84
CDY20694 Canola plasma membrane 38.75 27.4
CDY69709 Canola plasma membrane 35.41 26.24
CDY72296 Canola golgi, plasma membrane 20.94 20.75
CDX85566 Canola cytosol 3.34 5.43
Protein Annotations
EnsemblPlants:CDY66594EnsemblPlantsGene:GSBRNA2T00054618001GO:A0A078JIP7GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:Mem_transPANTHER:PTHR31752PANTHER:PTHR31752:SF10
PFAM:PF03547ProteinID:CDY66594ProteinID:CDY66594.1SEG:segTMHMM:TMhelixUniParc:UPI0004EDF5EB
UniProt:A0A078JIP7MapMan:11.2.4.1.1MapMan:24.2.5.2.1:::
Description
BnaCnng51580DBnaCnng51580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIP7]
Coordinates
chrLK035348:+:12373..15637
Molecular Weight (calculated)
49377.6 Da
IEP (calculated)
9.558
GRAVY (calculated)
0.551
Length
449 amino acids
Sequence
(BLAST)
001: MISWLDVYHV FSATVPLYVA MILGYLSAKH LNIFSLEQCA GINKFVAKFS IPLLSFQVIS QNNPFKMSPK LILSDILQKI LAFVVLAVVL RFWHPTGGRG
101: DKLGWIITGL SVSVLPNTLI LGIPILSAID GDAAVNILVQ IVVLQSLIWY NILLFLFEIN AARKITSSGA SIEHRGNGNE EADIEQEPKE EVAIVRTRSP
201: GTGKILLKAW QKLIINPNTY ATLFGLVWAT LHFRLGWKLP EMIGKSVHMI SDGGLGMAMF SLGNDNEEAD IEQEPKEEVA IVRTRSPGTG KILLKAWQKL
301: IINPNTYATL FGLVWATLHF RLGWKLPEMI GKSVHMISDG GLGMAMFSLG LFMASQSSII ACGTKMAIIT MVLKFVLGPA LMVASAFSIR LRSTLFRVTI
401: LQAALPQGIV PFVFAKEYNV NPEIASTGVI FGMLISLPIT LAYYFVLDL
Best Arabidopsis Sequence Match ( AT5G15100.1 )
(BLAST)
001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
Arabidopsis Description
PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.