Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85565 | Canola | plasma membrane | 97.64 | 80.11 |
| AT5G15100.1 | Thale cress | plasma membrane | 79.12 | 64.03 |
| CDX69551 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.44 | 58.93 |
| CDY66594 | Canola | plasma membrane | 85.52 | 56.57 |
| VIT_14s0108g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 54.21 | 45.1 |
| Solyc02g087660.2.1 | Tomato | plasma membrane | 52.53 | 43.7 |
| KRH40132 | Soybean | plasma membrane | 48.82 | 40.5 |
| TraesCS3A01G243700.1 | Wheat | plasma membrane | 48.15 | 40.06 |
| EES03524 | Sorghum | plasma membrane | 48.82 | 40.06 |
| PGSC0003DMT400003569 | Potato | plasma membrane | 35.02 | 40.0 |
| KRH58174 | Soybean | endoplasmic reticulum, plasma membrane | 48.48 | 39.78 |
| KRH01128 | Soybean | plasma membrane | 47.81 | 39.55 |
| HORVU3Hr1G067670.3 | Barley | plasma membrane | 47.47 | 39.5 |
| Zm00001d043660_P001 | Maize | plasma membrane | 47.81 | 39.23 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 47.14 | 39.22 |
| TraesCS3B01G276500.1 | Wheat | plasma membrane | 47.14 | 39.22 |
| KRH04363 | Soybean | endoplasmic reticulum, plasma membrane | 47.81 | 39.12 |
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 35.02 | 29.89 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 34.34 | 29.31 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 34.34 | 29.31 |
| Os01t0715600-00 | Rice | peroxisome, plasma membrane, plastid | 46.46 | 28.63 |
| CDX78697 | Canola | plasma membrane | 35.35 | 26.65 |
| CDY25767 | Canola | plasma membrane | 49.83 | 25.83 |
| CDX82059 | Canola | golgi, plasma membrane | 45.45 | 25.67 |
| CDY12491 | Canola | plasma membrane | 49.49 | 25.61 |
| CDX96288 | Canola | golgi, plasma membrane | 50.17 | 25.56 |
| CDY09501 | Canola | plasma membrane | 48.48 | 25.53 |
| CDY68262 | Canola | plasma membrane | 50.17 | 25.51 |
| CDX96484 | Canola | plasma membrane | 45.79 | 25.42 |
| CDY63826 | Canola | plasma membrane | 47.81 | 25.22 |
| CDY40380 | Canola | plasma membrane | 47.47 | 25.09 |
| CDX91695 | Canola | plasma membrane | 47.81 | 24.87 |
| CDX68327 | Canola | plasma membrane | 39.73 | 24.33 |
| CDY41467 | Canola | plasma membrane | 47.47 | 24.14 |
| CDY23471 | Canola | golgi, plasma membrane | 40.07 | 24.14 |
| CDY38263 | Canola | plasma membrane | 45.45 | 23.36 |
| CDY47745 | Canola | golgi, plasma membrane | 45.12 | 23.34 |
| CDX88341 | Canola | plasma membrane | 43.77 | 22.93 |
| CDX87543 | Canola | plasma membrane | 43.77 | 22.93 |
| CDY53978 | Canola | plasma membrane | 45.12 | 22.48 |
| CDY11886 | Canola | plasma membrane | 46.46 | 22.29 |
| CDX88606 | Canola | plasma membrane | 46.46 | 21.46 |
| CDY20694 | Canola | plasma membrane | 44.78 | 20.94 |
| CDY69709 | Canola | plasma membrane | 39.39 | 19.31 |
| CDY72296 | Canola | golgi, plasma membrane | 27.61 | 18.1 |
| CDX85566 | Canola | cytosol | 5.05 | 5.43 |
Protein Annotations
| EnsemblPlants:CDY63766 | EnsemblPlantsGene:GSBRNA2T00039615001 | GO:A0A078JC09 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF10 |
| PFAM:PF03547 | ProteinID:CDY63766 | ProteinID:CDY63766.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE406C |
| UniProt:A0A078JC09 | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | : | : | : |
Description
BnaCnng42600DBnaCnng42600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC09]
Coordinates
chrLK034349:-:8697..11604
Molecular Weight (calculated)
32761.2 Da
IEP (calculated)
9.179
GRAVY (calculated)
0.713
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRLILSDI LQKILAAVVL AVVIRFWHPT GGRGGKLGWI ITGLSVTVFP NTLIIGIPIL SAIDGDAAKN ILVQIVVLQC LIWSNILLFL FEINATWDLQ
101: SSGASIEHRV NDNEETDIEQ EPIEKEKAIV RTRSSGTGKI LLKAWRKFIV NPNTYAAMIG LIWATLHFRL GWKLPEMIDK SIHLISDGGL GMAMFSLGLF
201: MASQSSIIAC GTKMTIITMI LKFILGPALM IASAFCIRLR GTLFRVTILQ ATLPQGIVPF VFAKEYNVNP EIVSTGVIFG MLVFLPITLA YYFVLDL
101: SSGASIEHRV NDNEETDIEQ EPIEKEKAIV RTRSSGTGKI LLKAWRKFIV NPNTYAAMIG LIWATLHFRL GWKLPEMIDK SIHLISDGGL GMAMFSLGLF
201: MASQSSIIAC GTKMTIITMI LKFILGPALM IASAFCIRLR GTLFRVTILQ ATLPQGIVPF VFAKEYNVNP EIVSTGVIFG MLVFLPITLA YYFVLDL
001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
Arabidopsis Description
PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.