Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008722.1-P | Field mustard | golgi, plasma membrane, vacuole | 76.29 | 82.11 |
| CDX69551 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.5 | 79.46 |
| CDY63766 | Canola | golgi, plasma membrane | 64.03 | 79.12 |
| CDX85565 | Canola | plasma membrane | 76.84 | 77.9 |
| CDY66594 | Canola | plasma membrane | 82.29 | 67.26 |
| VIT_14s0108g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 59.95 | 61.62 |
| Solyc02g087660.2.1 | Tomato | plasma membrane | 59.67 | 61.34 |
| PGSC0003DMT400003569 | Potato | plasma membrane | 41.96 | 59.23 |
| KRH40132 | Soybean | plasma membrane | 55.31 | 56.7 |
| EES03524 | Sorghum | plasma membrane | 54.77 | 55.52 |
| KRH01128 | Soybean | plasma membrane | 54.22 | 55.43 |
| KRH58174 | Soybean | endoplasmic reticulum, plasma membrane | 54.5 | 55.25 |
| TraesCS3A01G243700.1 | Wheat | plasma membrane | 53.68 | 55.18 |
| TraesCS3B01G276500.1 | Wheat | plasma membrane | 53.41 | 54.9 |
| TraesCS3D01G247700.1 | Wheat | plasma membrane | 53.41 | 54.9 |
| HORVU3Hr1G067670.3 | Barley | plasma membrane | 53.41 | 54.9 |
| KRH04363 | Soybean | endoplasmic reticulum, plasma membrane | 54.22 | 54.82 |
| Zm00001d043660_P001 | Maize | plasma membrane | 53.68 | 54.42 |
| Bra023503.1-P | Field mustard | golgi, plasma membrane | 70.3 | 43.22 |
| Os01t0715600-00 | Rice | peroxisome, plasma membrane, plastid | 52.32 | 39.83 |
| AT5G16530.1 | Thale cress | plasma membrane | 35.69 | 37.32 |
| AT1G23080.1 | Thale cress | plasma membrane | 53.13 | 31.5 |
| AT2G01420.2 | Thale cress | plasma membrane | 51.77 | 30.84 |
| AT1G70940.1 | Thale cress | plasma membrane | 53.13 | 30.47 |
| AT1G77110.1 | Thale cress | plasma membrane | 46.05 | 29.65 |
| AT1G73590.1 | Thale cress | plasma membrane | 49.59 | 29.26 |
| AT5G57090.1 | Thale cress | golgi, plasma membrane, vacuole | 48.5 | 27.51 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:831362 | ProteinID:AED92117.1 | ArrayExpress:AT5G15100 | EnsemblPlantsGene:AT5G15100 |
| RefSeq:AT5G15100 | TAIR:AT5G15100 | RefSeq:AT5G15100-TAIR-G | EnsemblPlants:AT5G15100.1 | TAIR:AT5G15100.1 | InterPro:Auxin_eff_plant |
| ProteinID:CAC01829.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009555 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009926 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | RefSeq:NP_197014.1 | PFAM:PF03547 | Symbol:PIN8 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF10 | UniProt:Q9LFP6 |
| TIGRFAMs:TIGR00946 | TMHMM:TMhelix | UniParc:UPI0000048B3E | SEG:seg | : | : |
Description
PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
Coordinates
chr5:-:4892016..4894113
Molecular Weight (calculated)
40504.7 Da
IEP (calculated)
6.881
GRAVY (calculated)
0.640
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.