Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82059 | Canola | golgi, plasma membrane | 81.19 | 96.01 |
| CDY47745 | Canola | golgi, plasma membrane | 87.46 | 94.77 |
| Bra008105.1-P | Field mustard | golgi, plasma membrane | 93.73 | 94.64 |
| CDX96484 | Canola | plasma membrane | 80.55 | 93.64 |
| Bra015983.1-P | Field mustard | plasma membrane | 92.12 | 92.72 |
| CDY72296 | Canola | golgi, plasma membrane | 65.43 | 89.85 |
| KRH48642 | Soybean | plasma membrane | 74.92 | 77.02 |
| KRH41847 | Soybean | golgi, plasma membrane | 73.63 | 75.95 |
| VIT_17s0000g02420.t01 | Wine grape | plasma membrane | 72.03 | 75.42 |
| KRH39071 | Soybean | plasma membrane | 50.64 | 75.0 |
| Solyc03g118740.2.1 | Tomato | golgi, plasma membrane | 73.15 | 74.47 |
| PGSC0003DMT400014752 | Potato | golgi, plasma membrane | 72.67 | 73.62 |
| AT1G23080.1 | Thale cress | plasma membrane | 61.58 | 61.87 |
| AT1G70940.1 | Thale cress | plasma membrane | 62.7 | 60.94 |
| AT2G01420.2 | Thale cress | plasma membrane | 59.97 | 60.55 |
| AT5G57090.1 | Thale cress | golgi, plasma membrane, vacuole | 61.25 | 58.89 |
| AT1G77110.1 | Thale cress | plasma membrane | 46.46 | 50.7 |
| AT5G15100.1 | Thale cress | plasma membrane | 29.26 | 49.59 |
| AT5G16530.1 | Thale cress | plasma membrane | 27.33 | 48.43 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:843693 | UniProt:A0A178WFG7 | ProteinID:AAD04377.1 | ProteinID:AAG51807.1 |
| ProteinID:AEE35479.1 | EMBL:AF089084 | EMBL:AF372950 | ArrayExpress:AT1G73590 | EnsemblPlantsGene:AT1G73590 | RefSeq:AT1G73590 |
| TAIR:AT1G73590 | RefSeq:AT1G73590-TAIR-G | EnsemblPlants:AT1G73590.1 | TAIR:AT1G73590.1 | EMBL:AY093960 | Unigene:At.10969 |
| InterPro:Auxin_eff_plant | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009505 | GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 |
| GO:GO:0009640 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009908 | GO:GO:0009925 | GO:GO:0009926 | GO:GO:0009987 | GO:GO:0010051 |
| GO:GO:0010229 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0010338 | GO:GO:0010358 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030312 | GO:GO:0045177 | GO:GO:0048364 | GO:GO:0048367 |
| GO:GO:0048825 | GO:GO:0048826 | GO:GO:0055085 | InterPro:Mem_trans | RefSeq:NP_177500.1 | ProteinID:OAP17129.1 |
| PFAM:PF03547 | Symbol:PIN1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000256 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005679 | PO:PO:0006081 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31752 |
| PANTHER:PTHR31752:SF14 | UniProt:Q9C6B8 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | UniParc:UPI000004846C | SEG:seg |
Description
PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
Coordinates
chr1:+:27659673..27663253
Molecular Weight (calculated)
67023.0 Da
IEP (calculated)
9.336
GRAVY (calculated)
0.102
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.