Factsheet for Solyc03g118740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087870.2.1
Solyc09g008240.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	Solyc09g008240.2.1	AT2G36910.1	17237354
AT1G73590.1	Solyc02g087870.2.1	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014752	Potato	golgi, plasma membrane	98.36	97.88
VIT_17s0000g02420.t01	Wine grape	plasma membrane	79.38	81.65
KRH48642	Soybean	plasma membrane	80.52	81.32
KRH41847	Soybean	golgi, plasma membrane	80.03	81.09
CDX82059	Canola	golgi, plasma membrane	67.59	78.52
KRH39071	Soybean	plasma membrane	53.52	77.86
CDX96484	Canola	plasma membrane	67.43	77.01
CDY47745	Canola	golgi, plasma membrane	71.85	76.48
Bra008105.1-P	Field mustard	golgi, plasma membrane	73.98	73.38
AT1G73590.1	Thale cress	plasma membrane	74.47	73.15
Bra015983.1-P	Field mustard	plasma membrane	73.65	72.82
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	70.05	72.05
CDY72296	Canola	golgi, plasma membrane	52.21	70.42
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	66.94	69.8
Solyc04g007690.2.1	Tomato	plasma membrane	66.28	66.07
Solyc05g008060.2.1	Tomato	nucleus	67.92	63.55
Solyc07g006900.1.1	Tomato	plasma membrane	60.72	58.8
Solyc06g059730.1.1	Tomato	plasma membrane	46.81	55.0
Solyc02g087660.2.1	Tomato	plasma membrane	30.77	52.66
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	26.84	45.81
Solyc04g056620.1.1	Tomato	plasma membrane	24.71	43.52
CDX85566	Canola	cytosol	2.62	5.8

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	UniProt:E5KGD0	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009926	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EMBL:HQ127074	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF14	EnsemblPlantsGene:Solyc03g118740.2	EnsemblPlants:Solyc03g118740.2.1	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0001F3EF8F

Description

Auxin efflux carrier component 1 [Source:Projected from Arabidopsis thaliana (AT1G73590) UniProtKB/Swiss-Prot;Acc:Q9C6B8]

Coordinates

chr3:+:67567960..67571474

Molecular Weight (calculated)

66941.7 Da

IEP (calculated)

9.356

GRAVY (calculated)

0.038

Length

611 amino acids

Sequence
(BLAST)

001: MITLSDFYHV MTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FIAADTLQKL IVLGVLAVWA NVSKRGSLEW
101: SITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEFRGARLL ISEQFPDTAG SIVSIHVDSD VMSLDGRQVL ETEAELKEDG
201: KLHVTVRKSN ASRSDIFSRR SGGFSSTTPR PSNLTNAEIY SLQSSRNPTP RGSSFNHTDF YSMVAGTAGR NSNFGANDVY GMSNNSRGPT PRPSNYEEES
301: GKSRFNNYHG GAAAPQSNSN THYPAPNPGM FSPSNNGNKA HKSTAKKGDQ EVGKDLHMFV WSSSNSPVSD VFGGHDYTAN LDQPAAPNKD VRVPISPGKV
401: EGQRNNNQEN YMERDDFSFA NRDGVDQMNN QDGEKAGENK AKVMPPTSVM TRLILIMVWR KLIRNPNTYS SLFGLTWSLV SFRWNLKMPA IIAQSISILS
501: DAGLGMAMFS LGLFMALQPR IIACGNSVAS FAMAVRFLTG PAVMAAASIA VGLRGTLLHV AIVQAALPQG IVPFVFAKEY NVHPDILSTA VIFGMLIALP
601: ITLVYYIFMG L

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.