Factsheet for Solyc07g006900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087870.2.1
Solyc09g008240.2.1
Solyc09g010130.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	Solyc09g008240.2.1	AT2G36910.1	17237354
AT5G57090.1	Solyc02g087870.2.1	AT3G28860.1	17237354
AT5G57090.1	Solyc09g010130.2.1	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048251	Potato	plasma membrane	96.2	96.2
VIT_11s0052g00440.t01	Wine grape	plasma membrane	77.18	77.3
KRH02749	Soybean	plasma membrane	77.34	76.61
KRH19119	Soybean	endoplasmic reticulum	77.5	76.17
GSMUA_Achr1P15720_001	Banana	plasma membrane	61.01	75.05
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	74.96	73.11
Bra006834.1-P	Field mustard	plasma membrane	73.38	72.12
CDY11886	Canola	plasma membrane	70.52	71.89
CDY20694	Canola	plasma membrane	71.95	71.5
CDY69709	Canola	plasma membrane	68.46	71.29
Bra035648.1-P	Field mustard	plasma membrane	74.64	71.26
CDY38263	Canola	plasma membrane	63.87	69.72
Bra002763.1-P	Field mustard	plasma membrane	65.13	69.08
CDX88606	Canola	plasma membrane	70.36	69.05
CDY53978	Canola	plasma membrane	64.66	68.46
Os06t0660200-01	Rice	plasma membrane	65.93	66.03
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	65.93	65.82
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	65.93	65.72
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	65.77	65.66
EER88769	Sorghum	plasma membrane	65.13	65.66
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	65.77	65.46
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	64.82	64.31
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	58.8	62.46
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	57.84	62.29
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	58.8	60.72
Solyc04g007690.2.1	Tomato	plasma membrane	58.64	60.36
Solyc05g008060.2.1	Tomato	nucleus	59.75	57.73
Solyc06g059730.1.1	Tomato	plasma membrane	44.85	54.42
Solyc02g087660.2.1	Tomato	plasma membrane	30.59	54.06
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	25.67	45.25
Solyc04g056620.1.1	Tomato	plasma membrane	23.45	42.65

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	UniProt:E5KGD3	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009921	GO:GO:0009926	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EMBL:HQ127077	InterPro:Mem_trans	PFAM:PF03547
InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	EnsemblPlantsGene:Solyc07g006900.1	EnsemblPlants:Solyc07g006900.1.1	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0001F3EF91	SEG:seg	:	:	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:E5KGD3]

Coordinates

chr7:+:1755020..1757837

Molecular Weight (calculated)

68569.3 Da

IEP (calculated)

9.571

GRAVY (calculated)

0.180

Length

631 amino acids

Sequence
(BLAST)

001: MINGKDIYDV LAAIIPLYVA MILAYGSVRW WKIFTPDQCS GINRFVAVFA VPLLGFHFIS TNDPYAMNYH FIAADSLQKV VILFALFIWH LFSKRGNLEW
101: VITLFSLSTL PNTLVMGIPL LKAMYGDFSG NLMVQIVVMQ SVIWYTLMLF LFEYRGAKLL IGEQFPETAA SITSFRVESD VVSLNGREPL QADAEIGDDG
201: KLHVIVRRSS ASSIISSYNK GILQSNNMTP RASNLTGVEI YSVQSSREPT PRASSFNQTD FYAMFASKTA SPKHGYTNSY GGDVFSLQSS KGPTPRTSNF
301: EEEMSKIGSN KKNRGGRSMS GELYNSSSTA STNGLVYPPP NPMFVGQRKK EVGSGSGVPT PVPVPVPVPV SMSNSNSNSN SKELHMFVWS SSASPTSEGN
401: HKHAISKGGS SELGVLDASK AVLQQEIAAA RENASSVSKG NVDKEIEIED GSKNIEDGEK KSQMPPASVM TRLILIMVWR KLIRNPNTYA SLIGLIWSLI
501: SYRWNIQMPS IVKGSISILS DAGLGMAMFS LGLFMALQPK IIACGKSVAT FSMAVRFLTG PAVIAATSIA IGLRGVLLHV AIVQAALPQG IVPFVFAKEY
601: NLHPDILSTA VIFGMLVALP ITILYYVLLG V

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.