Factsheet for PGSC0003DMT400048251

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003590
PGSC0003DMT400009924
PGSC0003DMT400022861

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	PGSC0003DMT400009924	AT2G36910.1	17237354
AT5G57090.1	PGSC0003DMT400003590	AT3G28860.1	17237354
AT5G57090.1	PGSC0003DMT400022861	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006900.1.1	Tomato	plasma membrane	96.2	96.2
VIT_11s0052g00440.t01	Wine grape	plasma membrane	78.13	78.25
KRH02749	Soybean	plasma membrane	77.97	77.24
KRH19119	Soybean	endoplasmic reticulum	77.97	76.64
GSMUA_Achr1P15720_001	Banana	plasma membrane	61.01	75.05
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	75.12	73.26
Bra006834.1-P	Field mustard	plasma membrane	72.9	71.65
CDY11886	Canola	plasma membrane	70.21	71.57
CDY20694	Canola	plasma membrane	71.79	71.34
Bra035648.1-P	Field mustard	plasma membrane	74.64	71.26
CDY69709	Canola	plasma membrane	67.67	70.46
CDY38263	Canola	plasma membrane	63.71	69.55
Bra002763.1-P	Field mustard	plasma membrane	64.98	68.91
CDX88606	Canola	plasma membrane	70.05	68.74
CDY53978	Canola	plasma membrane	64.5	68.29
Os06t0660200-01	Rice	plasma membrane	66.24	66.35
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	66.4	66.3
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	66.4	66.19
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	66.24	66.14
EER88769	Sorghum	plasma membrane	65.61	66.13
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	66.24	65.93
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	65.29	64.78
PGSC0003DMT400021600	Potato	golgi, plasma membrane	58.95	62.63
PGSC0003DMT400072459	Potato	golgi, plasma membrane	57.84	62.18
PGSC0003DMT400014752	Potato	golgi, plasma membrane	58.8	60.42
PGSC0003DMT400078330	Potato	golgi, plasma membrane	59.59	57.49
PGSC0003DMT400079013	Potato	plasma membrane	45.8	54.73
PGSC0003DMT400015267	Potato	cytosol	39.46	53.66
PGSC0003DMT400003569	Potato	plasma membrane	21.87	53.08
PGSC0003DMT400017300	Potato	plasma membrane	7.92	50.51
PGSC0003DMT400046253	Potato	plasma membrane	25.67	45.63
PGSC0003DMT400017301	Potato	golgi, plasma membrane	12.2	43.5
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	20.29	39.88

Protein Annotations

EntrezGene:102583064	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009921	GO:GO:0009926	GO:GO:0009987
GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1BM53
InterPro:Mem_trans	PFAM:PF03547	EnsemblPlantsGene:PGSC0003DMG400018745	PGSC:PGSC0003DMG400018745	EnsemblPlants:PGSC0003DMT400048251	InterPro:PIN2
PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI000296A0B4	RefSeq:XP_015160265.1
SEG:seg	:	:	:	:	:

Description

Auxin efflux facilitator [Source:PGSC_GENE;Acc:PGSC0003DMG400018745]

Coordinates

chr7:+:2647055..2649975

Molecular Weight (calculated)

68670.4 Da

IEP (calculated)

9.508

GRAVY (calculated)

0.166

Length

631 amino acids

Sequence
(BLAST)

001: MINGKDIYDV LAAIIPLYVA MILAYGSVRW WKIFTPDQCS GINRFVAVFA VPLLGFHFIS TNDPYSMNYH FIAADSLQKV VILFALFIWH VFSKRGSLEW
101: VITLFSLSTL PNTLVMGIPL LKAMYGDFSG NLMVQIVVMQ SVIWYTLMLF MFEYRGAKLL IGEQFPETAA SITSFRVESD VISLNGREPL QADAEIGDDG
201: KLHVIVRRSS ASSIISSYNK GILQSNNMTP RASNLTGVEI YSVQSSREPT PRASSFNQSD FYAMFASKTA SPKHGYTNSY GGDVFSVQSS KGPTPRTSNF
301: EEEMSKIGSN KKNRGGRSMS GELYNSGSNA STNGLVYPPP NPMFSGQRKK EVGSGSGVPT PVSVPVPVPI PVPMSNSNNN SKELHMFVWS SSASPTSEGN
401: HKHAINRGDS SELGVLDASK AVLQQEIAAA RENASSVSKG NVEKEIEIED GSKNMEDGEK KSQMPPASVM TRLILIMVWR KLIRNPNTYA SLIGLIWSLV
501: SFRWNIQMPS IVKGSISILS DAGLGMAMFS LGLFMALQPK IIACGKSVAT FSMAVRFLTG PAVIAATSIA IGLRGVLLHV AIVQAALPQG IVPFVFAKEY
601: NLHPDILSTA VIFGMLVALP ITILYYVLLG V

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.