Factsheet for PGSC0003DMT400003590

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014752
PGSC0003DMT400017681
PGSC0003DMT400048251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	PGSC0003DMT400014752	AT1G73590.1	17237354
AT3G28860.1	PGSC0003DMT400017681	AT3G21640.1	14517332
AT3G28860.1	PGSC0003DMT400048251	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087870.2.1	Tomato	plasma membrane	99.52	99.52
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	93.43	93.43
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	93.19	93.12
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	92.95	92.88
CDY65012	Canola	plasma membrane	90.55	90.26
Bra025359.1-P	Field mustard	plasma membrane	90.47	90.26
AT3G28860.1	Thale cress	plasma membrane	90.47	90.26
CDX86408	Canola	plasma membrane	89.19	90.06
Bra039042.1-P	Field mustard	plasma membrane	90.23	90.02
CDY00109	Canola	plasma membrane	89.51	89.8
CDY20012	Canola	plasma membrane	90.07	89.78
GSMUA_Achr8P24160_001	Banana	plasma membrane	79.82	88.47
Os04t0459000-01	Rice	plasma membrane	85.03	84.35
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	84.47	83.53
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	84.31	83.44
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	84.39	83.39
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	83.99	83.06
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	84.63	83.03
HORVU2Hr1G080200.1	Barley	plasma membrane	84.15	82.95
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	83.99	82.86
Zm00001d026426_P005	Maize	cytosol	83.59	82.01
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	40.11	81.86
Zm00001d002119_P006	Maize	cytosol	82.87	81.75
TraesCS2B01G550700.2	Wheat	plasma membrane	81.91	81.38
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	82.15	81.04
TraesCS2D01G523100.2	Wheat	cytosol	82.47	81.04
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	82.39	81.02
GSMUA_Achr4P09980_001	Banana	plasma membrane	73.26	79.98
PGSC0003DMT400011703	Potato	cytosol	8.17	61.08
PGSC0003DMT400045176	Potato	peroxisome	51.16	50.84
PGSC0003DMT400009924	Potato	peroxisome	53.48	50.11
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	45.8	44.44
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	40.11	44.06
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	43.72	43.54
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	42.19	43.48
PGSC0003DMT400007960	Potato	plasma membrane	43.88	43.42
PGSC0003DMT400049576	Potato	plasma membrane	43.23	42.89
PGSC0003DMT400034908	Potato	plasma membrane	43.23	42.89
PGSC0003DMT400011930	Potato	peroxisome	42.67	41.41
PGSC0003DMT400069516	Potato	peroxisome	39.31	41.4
PGSC0003DMT400013988	Potato	plasma membrane	40.51	41.27
PGSC0003DMT400019085	Potato	plasma membrane	40.67	39.26
PGSC0003DMT400058977	Potato	plastid	43.31	35.43

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:102587959	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M0ZLZ3	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	EnsemblPlantsGene:PGSC0003DMG400001419	PGSC:PGSC0003DMG400001419	EnsemblPlants:PGSC0003DMT400003590	ScanProsite:PS00211
PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000296B6CF	RefSeq:XP_006338462.1	SEG:seg	:

Description

LO4 [Source:PGSC_GENE;Acc:PGSC0003DMG400001419]

Coordinates

chr2:+:46284188..46291947

Molecular Weight (calculated)

136244.0 Da

IEP (calculated)

8.113

GRAVY (calculated)

0.104

Length

1249 amino acids

Sequence
(BLAST)

0001: MAETTEGKSM PEAEKKKEQS LPFYQLFSFA DKYDYLLMTC GSIGAILHGS SMPVFFLLFG EMVNGFGKNQ MDLHKMTHEV SKYALYFVYL GLIVCASSYA
0101: EIGCWMYTGE RQVSTLRKKY LEAVLKQDVG FFDTDARTGD IVFSVSTDTL LVQDAISEKV GNFIHYLSTF LAGLVVGFVS AWRLALLSVA VIPGIAFAGG
0201: LYAYTLTGLT SKSRESYANA GIIAEQAIAQ VRTVYSYVGE TKALNSYSDA IQNTLKLGYK AGMAKGLGLG CTYGIACMSW ALVFWYAGVF IRNGQSDGGK
0301: AFTAIFSAIV GGMSLGQSFS NLGAFSKGKA AGYKLMEIIR QKPTIVQDTL DGKCLSEVSG NIEFKNVTFS YPSRPDVIIF RDFNIFFPAG KTVAVVGGSG
0401: SGKSTVVSLI ERFYDPNDGQ VLLDNVDIKT LQLRWLRDQI GLVNQEPALF ATTILENILY GKPDATMAEV EAATCASNAH SFITLLPNGY NTQVGERGVQ
0501: LSGGQKQRIA IARAMLKNPK ILLLDEATSA LDAGSESIVQ EALDRLMVGR TTVVVAHRLS TIRNVDSIAV IQQGQVVETG THEELISKAG AYASLIRFQE
0601: MVGNRDFSNP STRRTRSTRL SHSLSTKSLS LRSGSLRNLS YSYSTGADGR IEMISNAETD RKNPAPQNYF CRLLKLNAPE WPYSIMGAVG SVLSGFIGPT
0701: FAIVMSNMIE VFYYTNPATM ERKTKEYVFI YIGAGLYAVV AYLIQHYFFS IMGENLTTRV RRMMLSAILR NEVGWFDEEE NNSSLLAARL ATDAADVKSA
0801: IAERISVILQ NMTSLLTSFI VAFIVEWRVS LLILATFPLL VLANFAQQLS LKGFAGDTAK AHAKTSMIAG EGVSNIRTVA AFNAQEKIIS LFSQELRVPQ
0901: MQSLRRSQMS GLLFGISQLA LYGSEALILW YGAHLVNNGV STFSKVIKVF VVLVITANSV AETVSLAPEI IRGGEAVGSV FSILDRSTRV DPDDPEADPV
1001: ESIRGDIELR HVDFAYPSRP DVSVFKDLNL RIRAGQSQAL VGASGSGKSS VIALIERFYD PTGGKVMIDG KDIRRLNLKS LRLKIGLVQQ EPALFAASIF
1101: ENIAYGKEGA TEAEVIEAAR AANVHTFVSG LPEGYKTPVG ERGVQLSGGQ KQRIAIARAV LKDPSILLLD EATSALDAES ECVLQEALER LMRGRTTVLV
1201: AHRLSTIRNV DTIGVVQDGR IVEQGSHSEL ISRPEGAYSR LLQLQHHRI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.