Factsheet for PGSC0003DMT400018820

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009290.2.1	Tomato	nucleus	96.74	88.93
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	82.05	87.13
PGSC0003DMT400011703	Potato	cytosol	10.57	81.44
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	79.64	79.03
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	66.36	77.22
Os05t0137200-01	Rice	plasma membrane	23.54	77.1
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	75.68	75.97
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	75.45	75.74
CDX67881	Canola	cytosol	70.24	75.27
CDY25095	Canola	cytosol	70.4	75.12
CDY27510	Canola	cytosol	69.39	74.48
CDY48003	Canola	cytosol	68.76	74.25
CDX80072	Canola	cytosol	68.92	74.04
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	72.96	73.47
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	73.04	73.27
CDY51307	Canola	cytosol, peroxisome, plasma membrane	71.79	73.1
CDY15432	Canola	cytosol	69.39	72.96
CDX89963	Canola	cytosol, nucleus, plasma membrane	71.56	72.86
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	73.04	72.76
Bra004484.1-P	Field mustard	cytosol	72.49	72.66
Bra040475.1-P	Field mustard	cytosol	72.65	72.65
CDY37776	Canola	cytosol, peroxisome, plasma membrane	70.16	72.65
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	73.12	72.61
CDY15249	Canola	cytosol, peroxisome, plasma membrane	71.48	72.44
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.72	72.34
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	70.94	72.12
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	72.03	72.08
GSMUA_Achr1P25070_001	Banana	plasma membrane	50.74	72.08
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	67.75	70.95
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	67.21	70.33
CDY24379	Canola	plasma membrane	63.64	70.06
OQU77362	Sorghum	mitochondrion, plasma membrane	62.63	69.84
KXG32330	Sorghum	plastid	69.39	69.77
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	69.23	69.72
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	63.17	69.37
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.2	69.21
Bra003445.1-P	Field mustard	peroxisome	66.59	68.34
CDY58790	Canola	peroxisome	65.35	68.32
CDY51560	Canola	peroxisome	65.19	67.07
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	66.12	66.75
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	66.12	66.69
TraesCS1A01G081300.1	Wheat	unclear	66.12	66.69
HORVU1Hr1G017460.3	Barley	plasma membrane	66.2	66.41
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	68.53	66.07
PGSC0003DMT400007960	Potato	plasma membrane	63.17	64.42
PGSC0003DMT400011930	Potato	peroxisome	63.71	63.71
GSMUA_Achr9P16700_001	Banana	plasma membrane	62.7	63.54
PGSC0003DMT400034908	Potato	plasma membrane	60.61	61.95
PGSC0003DMT400019085	Potato	plasma membrane	58.28	57.96
PGSC0003DMT400003590	Potato	plasma membrane	44.44	45.8
PGSC0003DMT400045176	Potato	peroxisome	43.28	44.31
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	37.92	42.92
PGSC0003DMT400009924	Potato	peroxisome	43.43	41.94
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	40.33	41.39
PGSC0003DMT400013988	Potato	plasma membrane	38.77	40.7
PGSC0003DMT400049576	Potato	plasma membrane	39.01	39.87
PGSC0003DMT400069516	Potato	peroxisome	35.04	38.03
PGSC0003DMT400058977	Potato	plastid	40.79	34.38

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:102590445	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M1AB68	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	EnsemblPlantsGene:PGSC0003DMG400007295	PGSC:PGSC0003DMG400007295	EnsemblPlants:PGSC0003DMT400018820	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF290	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0002951C61	RefSeq:XP_006355823.1	SEG:seg	:	:

Description

Multidrug/pheromone exporter, MDR family, ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400007295]

Coordinates

chr6:+:335322..343008

Molecular Weight (calculated)

138584.0 Da

IEP (calculated)

8.006

GRAVY (calculated)

0.125

Length

1287 amino acids

Sequence
(BLAST)

0001: MAEGNGLNGN SGINEASSSG GQNNTSQQDS DKTKQAEKAN TVPFYKLFSF ADSTDMVLMI TGTIAAIGNG MSLPIMTILF GELTDSFGQN QNNKDVLRVV
0101: SRVSLKFVYL ALGCGVASFL QVACWMISGE RQASRIRSLY LKTILQQDIA FYDKETNTGE VVGRMSGDTV LIQDAMGEKV GKFVQLISTF IGGFVIAFTK
0201: GWLLTLVMLS VIPLLAISGG AMSHVLSKMA SSGQDAYAKA ATVVEQTIGS IRTVASFTGE KQAVADYNES LIKAYHSGAK EGLATGLGLG SVFAIIYCSY
0301: ALAIWYGARL ILEKGYTGGN VINIIIAVLT SSMSLGQAAP CMSAFAAGQA AAFKMFETIK RKPEIDAYDT NGKILDDIRG DIELNDVCFS YPARPDEQIF
0401: SGFSLFVSSG TTAALVGQSG SGKSTVISLI ERFYDPQSGQ VLIDGINLKD FQLKWIRGKI GLVSQEPVLF TASIKENILY GKHDATAEEI KAATELANAA
0501: KFIDKLPQGL DTMVGEHGTQ LSGGQKQRIA IARAILKDPR ILLLDEATSA LDAESERVVQ EALDRIMINR TTVIVAHRLT TVRNADMIAV IHRGKVVEKG
0601: THGELLKDPE GAYSQLIRLQ EVNNETKKSG LDERDSIDKS MGSGRQSSQR ISLMRSISRS SSGVGNSSRR SLSISLGLAT GLSVPETANT DTEMGIPEVA
0701: GKRLEVPIRR LAYLNKPEIP VMIIGTVAAI INGAILPIFG ILLSSVIKTF YEPPHELRKD SRFWALMFVL LGAVTLIAFP ARTYFFSIAG CKLIRRIRSM
0801: CFEKVVHMEV GWFDESEHST GIIGARLSAD AAAVRGLVGD ALAQMVQDTA TSIVGLAIAF EASWQLALIV LVMIPLIGLN GYIQIKFMKG FSADAKMMYE
0901: EASQVANDAV GGIRTVASFC AEEKVMEIYR KKCEGPLKAG IKQGLISGIG FGVSFALLFC VYATSFYAGA RLVQDGKITF SDVFRVFFAL TMAAIGISQS
1001: SSLAPDSSKA KSAAASVFAI LDRKSKIDPS DDSGMTLDTV KGDIELKHVS FKYPTRPDVQ ILRDLCLTIR SGKTVALVGE SGCGKSTVIS LLQRFYDPDS
1101: GQISLDGIEI QKFQVKWLRQ QMGLVSQEPV LFNDTIRANI AYGKEGNATE AEVLAAAELA NAHKFISGLQ QSYDTTVGER GTQLSGGQKQ RVAIARAILK
1201: NPKILLLDEA TSALDAESER IVQDALDRVM VNRTTVVVAH RLSTIKGADI IAVVKNGVIV EKGKHDTLIN IKDGFYSSLV ALHTSAS

Best Arabidopsis Sequence Match ( AT3G62150.3 )
(BLAST)

0001: MDSVIESEEG LKVDSPNRAD AETSNSKIHE EDEKELKTES DLKEEKKKTE KNKQEEDEKT KTVPFHKLFA FADSFDIILM ILGTIGAVGN GLGFPIMTIL
0101: FGDVIDVFGQ NQNSSDVSDK IAKVALKFVY LGLGTLVAAL LQVSGWMISG ERQAGRIRSL YLQTILRQDI AFFDVETNTG EVVGRMSGDT VLIQDAMGEK
0201: VGKAIQLVST FIGGFVIAFT EGWLLTLVMV SSIPLLVMSG AALAIVISKM ASRGQTSYAK AAVVVEQTVG SIRTVASFTG EKQAISNYNK HLVSAYRAGV
0301: FEGASTGLGL GTLNIVIFCT YALAVWYGGK MILEKGYTGG QVLIIIFAVL TGSMSLGQAS PCLSAFAAGQ AAAYKMFEAI KRKPEIDASD TTGKVLDDIR
0401: GDIELNNVNF SYPARPEEQI FRGFSLSISS GSTVALVGQS GSGKSTVVSL IERFYDPQSG EVRIDGINLK EFQLKWIRSK IGLVSQEPVL FTSSIKENIA
0501: YGKENATVEE IRKATELANA SKFIDKLPQG LDTMVGEHGT QLSGGQKQRI AVARAILKDP RILLLDEATS ALDAESERIV QEALDRIMVN RTTVVVAHRL
0601: STVRNADMIA VIHQGKIVEK GSHSELLRDP EGAYSQLIRL QEDTKQTEDS TDEQKLSMES MKRSSLRKSS LSRSLSKRSS SFSMFGFPAG IDTNNEAIPE
0701: KDIKVSTPIK EKKVSFFRVA ALNKPEIPML ILGSIAAVLN GVILPIFGIL ISSVIKAFFK PPEQLKSDTR FWAIIFMLLG VASMVVFPAQ TIFFSIAGCK
0801: LVQRIRSMCF EKVVRMEVGW FDETENSSGA IGARLSADAA TVRGLVGDAL AQTVQNLASV TAGLVIAFVA SWQLAFIVLA MLPLIGLNGY IYMKFMVGFS
0901: ADAKRMYEEA SQVANDAVGS IRTVASFCAE EKVMKMYKKK CEGPMRTGIR QGIVSGIGFG VSFFVLFSSY AASFYAGARL VDDGKTTFDS VFRVFFALTM
1001: AAVAISQSSS LSPDSSKASN AAASIFAVID RESKIDPSDE SGRVLDNVKG DIELRHISFK YPSRPDVQIF QDLCLSIRAG KTIALVGESG SGKSTVIALL
1101: QRFYDPDSGQ ITLDGVEIKT LQLKWLRQQT GLVSQEPVLF NETIRANIAY GKGGDATETE IVSAAELSNA HGFISGLQQG YDTMVGERGV QLSGGQKQRV
1201: AIARAIVKDP KVLLLDEATS ALDAESERVV QDALDRVMVN RTTVVVAHRL STIKNADVIA VVKNGVIVEK GKHETLINIK DGVYASLVQL HLSAST

Arabidopsis Description

ABCB21ABC transporter B family member 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.