Factsheet for PGSC0003DMT400034908

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 3
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005860.2.1	Tomato	plasma membrane	95.31	95.31
TraesCS6B01G145800.1	Wheat	cytosol	14.22	70.75
Os01t0695800-01	Rice	plasma membrane	14.54	69.85
PGSC0003DMT400011703	Potato	cytosol	9.05	68.26
VIT_10s0003g02540.t01	Wine grape	plasma membrane	65.29	66.78
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	28.83	66.61
PGSC0003DMT400007960	Potato	plasma membrane	65.61	65.45
VIT_10s0003g02570.t01	Wine grape	plasma membrane	63.86	64.89
Bra012621.1-P	Field mustard	plasma membrane	62.75	63.35
KRH21125	Soybean	plasma membrane	63.22	63.12
KRH11119	Soybean	plasma membrane	62.03	62.63
CDY35168	Canola	golgi, peroxisome, plasma membrane	54.09	62.42
VIT_10s0003g02580.t01	Wine grape	plasma membrane	62.51	62.21
AT4G18050.2	Thale cress	plasma membrane	61.56	62.2
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	61.95	60.61
HORVU3Hr1G021600.2	Barley	peroxisome, plasma membrane, vacuole	54.96	60.12
TraesCS3A01G117600.3	Wheat	peroxisome, plasma membrane	55.2	59.81
GSMUA_Achr2P20180_001	Banana	plasma membrane	45.75	59.08
TraesCS3A01G257500.1	Wheat	plasma membrane	58.86	58.95
TraesCS3D01G257500.1	Wheat	plasma membrane	58.7	58.84
Os05t0548300-01	Rice	plasma membrane	27.16	58.76
AT5G46540.1	Thale cress	golgi	58.22	58.73
TraesCS6D01G107600.1	Wheat	cytosol, plasma membrane, vacuole	42.34	58.64
TraesCS3B01G136800.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane, plastid	58.3	58.53
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	56.24	58.42
TraesCS3B01G290300.2	Wheat	peroxisome	58.7	58.33
KXG33192	Sorghum	cytosol	57.82	57.37
Zm00001d043762_P001	Maize	cytosol	57.59	56.95
Bra017539.1-P	Field mustard	plasma membrane	46.15	56.35
TraesCS2B01G012300.1	Wheat	plasma membrane	56.24	56.28
TraesCS2A01G009900.1	Wheat	plasma membrane	56.08	56.12
HORVU2Hr1G001630.2	Barley	plasma membrane	55.92	56.1
HORVU2Hr1G001530.10	Barley	plasma membrane	55.92	56.1
TraesCS3D01G258100.1	Wheat	plasma membrane	55.28	55.68
TraesCS2D01G010500.1	Wheat	plasma membrane	55.6	55.64
TraesCS3D01G257900.1	Wheat	peroxisome	55.68	55.55
TraesCS3A01G258200.1	Wheat	peroxisome	55.12	55.52
TraesCS2D01G010400.1	Wheat	plasma membrane	55.12	55.39
HORVU3Hr1G065280.1	Barley	plasma membrane	55.28	55.15
Os05t0548500-00	Rice	plasma membrane	55.12	55.08
Zm00001d009447_P002	Maize	plasma membrane	55.28	55.06
HORVU6Hr1G021320.43	Barley	peroxisome	55.2	54.94
HORVU3Hr1G065320.47	Barley	plasma membrane	55.52	54.91
TraesCS2A01G009600.1	Wheat	plasma membrane	54.65	54.91
TraesCS2B01G012100.3	Wheat	plasma membrane	54.57	54.83
KXG35311	Sorghum	plasma membrane	54.65	54.82
TraesCS6B01G145600.1	Wheat	peroxisome	54.81	54.59
TraesCS2B01G012200.1	Wheat	golgi	46.62	54.4
Zm00001d009448_P001	Maize	cytosol, peroxisome, plasma membrane	54.57	54.35
TraesCS3D01G362700.1	Wheat	cytosol, peroxisome, plasma membrane	55.12	54.26
TraesCS3B01G401600.3	Wheat	cytosol, peroxisome, plasma membrane	54.96	54.15
TraesCS3A01G369700.1	Wheat	peroxisome	54.96	54.06
Zm00001d011644_P002	Maize	plasma membrane	54.88	53.77
Os01t0533900-01	Rice	endoplasmic reticulum, vacuole	35.66	53.77
KXG32655	Sorghum	peroxisome	55.04	53.68
Os01t0695700-00	Rice	plasma membrane	54.01	53.67
Zm00001d005528_P001	Maize	plasma membrane	51.23	53.62
Os02t0323000-01	Rice	cytosol, peroxisome	17.95	53.43
TraesCS3A01G258400.3	Wheat	peroxisome	53.14	53.18
TraesCS1A01G368500.1	Wheat	cytosol, peroxisome, plasma membrane	53.3	53.04
TraesCS1B01G387400.1	Wheat	peroxisome	53.22	52.96
Zm00001d044564_P008	Maize	cytosol, peroxisome, plasma membrane	55.52	52.83
TraesCS5A01G495900.1	Wheat	plasma membrane	53.14	52.8
HORVU3Hr1G065240.14	Barley	cytosol	53.61	52.73
TraesCS1D01G374300.1	Wheat	cytosol, peroxisome, plasma membrane	53.06	52.64
TraesCS3D01G258200.2	Wheat	peroxisome	52.58	52.58
TraesCS3A01G258000.1	Wheat	mitochondrion	55.36	52.56
TraesCS3B01G291100.3	Wheat	peroxisome	52.74	52.53
TraesCS3D01G258300.1	Wheat	cytosol, peroxisome, plasma membrane	52.74	52.49
TraesCS3B01G291000.1	Wheat	peroxisome	52.34	52.38
Os01t0534700-00	Rice	plasma membrane	45.99	52.35
PGSC0003DMT400011930	Potato	peroxisome	53.38	52.21
HORVU1Hr1G078450.24	Barley	plasma membrane	52.42	52.17
EES01319	Sorghum	cytosol	52.34	51.73
TraesCS3B01G290700.1	Wheat	peroxisome	43.05	51.72
Zm00001d043766_P005	Maize	cytosol	51.47	50.7
PGSC0003DMT400019085	Potato	plasma membrane	49.64	48.3
PGSC0003DMT400045176	Potato	peroxisome	44.32	44.39
PGSC0003DMT400003590	Potato	plasma membrane	42.89	43.23
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	38.76	42.92
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	40.91	41.07
PGSC0003DMT400049576	Potato	plasma membrane	40.11	40.11
PGSC0003DMT400013988	Potato	plasma membrane	38.92	39.97
PGSC0003DMT400009924	Potato	peroxisome	42.26	39.91
PGSC0003DMT400069516	Potato	peroxisome	35.5	37.69
OQU78384	Sorghum	plasma membrane	55.12	36.8
PGSC0003DMT400058977	Potato	plastid	39.71	32.74

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M1B1I0	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	EnsemblPlantsGene:PGSC0003DMG400013420	PGSC:PGSC0003DMG400013420	EnsemblPlants:PGSC0003DMT400034908	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF204	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI000296B422	SEG:seg	:	:	:

Description

MDR-like ABC transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400013420]

Coordinates

chr3:+:822878..830598

Molecular Weight (calculated)

136341.0 Da

IEP (calculated)

8.799

GRAVY (calculated)

0.153

Length

1259 amino acids

Sequence
(BLAST)

0001: MARGGDEKVP FYKLFAFANR NDIILMLLGI LGAIASGVSK PLMSLIFGDL VDSYGTSNQS NIRDKVSGIS LKFVYLGIGS GIASVLQVAC WVITGERQAT
0101: RIKCLYLKTI LRQDIEFFDT QSATGEVIER MSGDTILLQE AMGEKVGNFI MHMSTFIGGF VVAFIKEWHL TLVLLTTIPA IAISFICAAL VLSKMSGSGQ
0201: AAYADAGKVV EQTVGGIRTV VSFTGENLSI IDYNSKLENA YKPTVNQALA SGIGLGTTLM VSLFSYGLAI WYGAKLIIDK NYSGGDIITV LFSAMLGGSS
0301: LGQASPSLSA FSAGQAAAYK IYETIKRTPK IDPYDPSGIQ LEDIKGEIEL KDVYFKYPAR PDVQIFSGFS LYIPSGKTAA LVGQSGSGKS TVISLLERFY
0401: DPEAGEILID GVDIKKFQLK WLRQQMGLVS QEPVLFATTI GENIMYGKEN ASVEEIRNAI KLANAAKFID KLPKGLDTMV GGHGTQISGG QKQRIAIARA
0501: ILKDPRILLL DEATSALDVE SERIVQDALS NIMINRTTVV VAHRLTTIRN ADLIAVVNLG KLVEQGTHDE LIKDPDGAYS QLVQMQQKNK HVENTKGKEI
0601: EGSNAQKRLS CSKNPSGRSR RFSISSRKFA SKGASSRFSL AYDLGVTAAV DFHESILRDD GAESSEYIVN SSRNVSTRKL MSLAYLNKPE VPIMLVGTVA
0701: ASINGAVYPV FGLLISTAIK IFYESHHELR KDSRFWALMF VVIGVVIMIV APLQNYAFGI AGAKLIQRIR SMTFAKLVYQ EISWFDDPAN SCGAIGARLS
0801: SDASTIRNLV GDALATIVQN ISTVATGMVI ALIANWILAL IMLAIMPLLA LQGIIQIKLL QESNAEAKVA NEEASQVAND AIGSIRTVAS FCAEEKVMEM
0901: YQRKSEAPLK RGAKNGLVGG VGLGFSSFVL FSLYALTFYL GAILVKHDKA KFSDVFKVFF ALSMASIGLS ALGNLPSDLS KSKGAAASIF EILDRKPRID
1001: SSSSEGIMLD VIEGNIELQH ISFKYPTRPD MQIFRDLSLS IPAGKTVALV GESGSGKSTV ISLIERFYDP DQGYIYLDGV ELRKLNLRWL RQQMGLVGQE
1101: PILFNETISS NIAYGRQGEV TEEEIISVAK ASNAHNFISS LPNGYKTTVG ERGVQLSGGQ KQRIAIARAI LKDPKILLLD EATSALDTES ERIVQEALDR
1201: VMVNRTTVVV AHRLTTIKNA DVIAVVKNGV VAEKGTHDVL MNKTQGVYAS LVALQTGAT

Best Arabidopsis Sequence Match ( AT1G02520.3 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.