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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
 plasma membrane: 18260611
nucleus: 19321431
plasma membrane: 19502382
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19321431 doi
MK Choudhary, D Basu, A Datta, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G387400.1 Wheat peroxisome 79.13 78.81
TraesCS1A01G368500.1 Wheat cytosol, peroxisome, plasma membrane 78.89 78.58
HORVU1Hr1G078450.24 Barley plasma membrane 78.57 78.26
TraesCS1D01G374300.1 Wheat cytosol, peroxisome, plasma membrane 78.81 78.25
Os01t0695800-01 Rice plasma membrane 16.19 77.86
Zm00001d009448_P001 Maize cytosol, peroxisome, plasma membrane 77.86 77.61
Os01t0290700-01 Rice cytosol, plasma membrane 8.73 74.32
Os05t0137200-01 Rice plasma membrane 20.95 67.18
Os05t0548300-01 Rice plasma membrane 29.13 63.06
Os01t0695700-00 Rice plasma membrane 61.59 61.25
VIT_10s0003g02540.t01 Wine grape plasma membrane 58.57 59.95
Bra012621.1-P Field mustard plasma membrane 58.73 59.34
GSMUA_Achr2P20180_001 Banana plasma membrane 45.87 59.28
VIT_10s0003g02570.t01 Wine grape plasma membrane 58.1 59.08
KRH21125 Soybean plasma membrane 58.41 58.37
AT4G18050.2 Thale cress plasma membrane 57.22 57.87
Solyc02g071350.2.1 Tomato plastid 57.86 57.72
PGSC0003DMT400007960 Potato plasma membrane 57.78 57.69
Os01t0533900-01 Rice endoplasmic reticulum, vacuole 38.17 57.6
Os01t0534700-00 Rice plasma membrane 50.56 57.59
VIT_10s0003g02580.t01 Wine grape plasma membrane 57.62 57.39
KRH11119 Soybean plasma membrane 56.67 57.26
CDY35168 Canola golgi, peroxisome, plasma membrane 49.13 56.74
VIT_10s0003g02550.t01 Wine grape cytosol, nucleus, peroxisome 24.52 56.7
Solyc02g071340.1.1 Tomato plasma membrane 56.59 56.45
PGSC0003DMT400034908 Potato plasma membrane 55.08 55.12
Solyc03g005860.2.1 Tomato plasma membrane 54.21 54.25
AT5G46540.1 Thale cress golgi 53.57 54.09
OQU78384 Sorghum plasma membrane 77.46 51.75
Bra017539.1-P Field mustard plasma membrane 41.67 50.92
Os02t0323000-01 Rice cytosol, peroxisome 16.27 48.46
Os04t0642000-01 Rice cytosol, peroxisome, plasma membrane 21.9 45.1
Os02t0189800-00 Rice mitochondrion 25.4 42.78
Os04t0459000-01 Rice plasma membrane 42.38 42.41
Os02t0190300-01 Rice plasma membrane 41.27 41.77
Os02t0693700-02 Rice plasma membrane 41.75 41.61
Os02t0190000-00 Rice plasma membrane 40.0 40.55
Os03t0181750-00 Rice plasma membrane 29.76 38.86
Os08t0564300-04 Rice plasma membrane 39.44 36.98
Os04t0481700-01 Rice plasma membrane 18.81 35.37
Os03t0280000-01 Rice plasma membrane 38.89 34.73
Os01t0975900-02 Rice plasma membrane 5.4 26.98
Os03t0181675-00 Rice cytosol, nucleus, peroxisome, plastid 8.17 17.67
Os01t0976000-01 Rice nucleus 1.98 4.41
Protein Annotations
Gene3D:1.20.1560.10EntrezGene:107275736MapMan:24.1.3.1.1Gene3D:3.40.50.300UniProt:A0A0P0WQF3InterPro:AAA+_ATPase
InterPro:ABC1_TM_domInterPro:ABC1_TM_sfInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSProteinID:BAS95187.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887
GO:GO:0042626GO:GO:0055085InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640EnsemblPlantsGene:Os05g0548500
EnsemblPlants:Os05t0548500-00InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211PFscan:PS50893
PFscan:PS50929PANTHER:PTHR24221PANTHER:PTHR24221:SF275SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123
TMHMM:TMhelixUniParc:UPI00018C6AD3RefSeq:XP_015637815.1SEG:seg::
Description
ABC TRANSPORTER B FAMILY MEMBER 19Similar to MDR-like ABC transporter. (Os05t0548500-00)
Coordinates
chr5:+:27211900..27217567
Molecular Weight (calculated)
136405.0 Da
IEP (calculated)
8.362
GRAVY (calculated)
0.126
Length
1260 amino acids
Sequence
(BLAST)
0001: MEEASTARAA DGDKRGKEEN DRRMAKDGKV AFHHLFKYAD STDVALMLVG TIASLASGMS QVIMTIIFGQ MVDAFGKSSP GNILHQVNKA VLYFVYLGIG
0101: SGIVCFLQVS CWSVTGERQA TRIRSLYLKT ILRQDMAFFD KEMTTGQVIS SISTDTTLIQ GATGEKVGKF LQLVTTFPGG FVLAFLKGWL LTLVMLSTIP
0201: PFIFAAGIVS KMLAKISNEG LASYSKAGDI VEQTVGSIRT VVSFNGEKKA IGLYNDLIKK AYKGAVKEGF IQGFGMGFLN LIYFSSFGLI VWYGSKLSLS
0301: RGYSGADIMN ILFGIMIGAR ALGDATPCTA AFEEGRIAAY RLFKVIKRKP EIDYDDTSGI VLEDIKGDIE LKDVFFSYPS RSEQLIFDGF SMCVSNGTTM
0401: AIVGESGSGK STVINLVERF YDPQAGEVLI DGMNIKSLRL EWIRGKIGLV NQEPILFMTS IKDNILYGKE NATLEEIKRA AELANAARFI ESMPNGYDTL
0501: VGQRGAQLSG GQKQRIAIAR AILKNPKILL LDEATSALDL ESERIVQDAL NQIMVGRTTL VVAHRLSTVR NAHCISVVHK GKIAEQGHHD ELVKDPNGAY
0601: SQLIRLQEAQ QAIDPHLDGP LNKRSQSLKR SLSRNSAGSS SHSLNLPFSL RGATELLEYD GADGENRNLK NDGKLPKKGS MGRLISLNKP EIAILLFGSL
0701: AAAIDGAVFP MIGLVLASAV KVFYESPDKR EKDATFWGLL CVGMGAIAMI SKLANILLFA IAGGKLIKRI RALTFRSIVH QEVSWFDHPA NSSGALGGKL
0801: CVDALNVRRL VGDNLALLVQ CTATLVCGIL IAMIADWKLS LIILFVIPLI GLQGYAQVRF LQGFSQDAKI MYEEASQVAT DAVGSIRTVA SYCAEKKVMT
0901: KYNQKCQASR YQGIRTGIVG GLGFGFSNMM LFMTSALCYY VGAKFVSQGN STFGDVFKAF FSLVVAMLGV SSTAAMASDS SKAKDSASSI FAILDRKSQI
1001: DSSSNEGLTL ELVKGDIEFT HISFRYPSRP DVQIFSDFTL SIPSGKTVAL VGQSGSGKST AIALLERFYD PDSGVILLDG VEIKKLEISW LRDQMGLVSQ
1101: EPVLFNDTIR ANIAYGKNEE VTEEEIVAAA KAANAHEFIS SMPEGYSTSV GERGTQLSGG QKQRIAIARA IVKDPRILLL DEATSALDAE SERIVQDALD
1201: HVMVGRTTVV VAHRLSTIQG ADIIAVLKDG AIVEKGRHEA LMGIASGAYA SLVELRHNVT
Best Arabidopsis Sequence Match ( AT1G02520.3 )
(BLAST)
0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN
Arabidopsis Description
ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.