Factsheet for Os05t0548300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
YLoc:	endoplasmic reticulum

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0695800-01	Rice	plasma membrane	31.62	70.23
Os01t0290700-01	Rice	cytosol, plasma membrane	17.18	67.57
Os05t0137200-01	Rice	plasma membrane	43.47	64.38
Zm00001d009447_P002	Maize	plasma membrane	82.13	37.82
Os04t0481700-01	Rice	plasma membrane	40.03	34.78
Os01t0534700-00	Rice	plasma membrane	62.37	32.82
Os02t0189800-00	Rice	mitochondrion	41.07	31.95
VIT_10s0003g02540.t01	Wine grape	plasma membrane	64.78	30.63
GSMUA_Achr2P20180_001	Banana	plasma membrane	50.52	30.15
Bra012621.1-P	Field mustard	plasma membrane	64.6	30.15
VIT_10s0003g02570.t01	Wine grape	plasma membrane	63.06	29.62
Os05t0548500-00	Rice	plasma membrane	63.06	29.13
Os01t0695700-00	Rice	plasma membrane	62.89	28.89
KRH21125	Soybean	plasma membrane	62.54	28.87
AT4G18050.2	Thale cress	plasma membrane	61.68	28.81
KRH11119	Soybean	plasma membrane	61.68	28.79
VIT_10s0003g02580.t01	Wine grape	plasma membrane	62.37	28.7
PGSC0003DMT400007960	Potato	plasma membrane	62.03	28.61
CDY35168	Canola	golgi, peroxisome, plasma membrane	53.61	28.6
Solyc02g071350.2.1	Tomato	plastid	62.03	28.58
AT5G46540.1	Thale cress	golgi	60.14	28.04
Solyc02g071340.1.1	Tomato	plasma membrane	59.97	27.63
PGSC0003DMT400034908	Potato	plasma membrane	58.76	27.16
Solyc03g005860.2.1	Tomato	plasma membrane	58.59	27.09
Os03t0181750-00	Rice	plasma membrane	37.46	22.59
Os02t0323000-01	Rice	cytosol, peroxisome	15.98	21.99
Bra017539.1-P	Field mustard	plasma membrane	36.25	20.47
Os02t0190300-01	Rice	plasma membrane	43.13	20.16
Os02t0190000-00	Rice	plasma membrane	42.1	19.71
Os02t0693700-02	Rice	plasma membrane	42.1	19.38
Os04t0459000-01	Rice	plasma membrane	41.24	19.06
Os08t0564300-04	Rice	plasma membrane	41.41	17.93
Os01t0533900-01	Rice	endoplasmic reticulum, vacuole	23.02	16.05
Os03t0280000-01	Rice	plasma membrane	38.66	15.95
Os01t0975900-02	Rice	plasma membrane	6.53	15.08
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	3.78	4.04
Os01t0976000-01	Rice	nucleus	2.06	2.12
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	0.17	0.17
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:BAF18140.1	ProteinID:BAS95185.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	EnsemblPlantsGene:Os05g0548300	EnsemblPlants:Os05t0548300-01
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF270	UniProt:Q0DG83	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0000E125C5	SEG:seg	:	:	:

Description

ABC TRANSPORTER B FAMILY MEMBER 18ABC transporter, transmembrane domain domain containing protein. (Os05t0548300-01)

Coordinates

chr5:+:27207752..27210015

Molecular Weight (calculated)

62518.0 Da

IEP (calculated)

8.534

GRAVY (calculated)

0.269

Length

582 amino acids

Sequence
(BLAST)

001: LNKPEIPVLL LGTAAAVVAG VLFPMLGLLI SSSIKSFYEP PHQLKKDARF WTLMYVAAGI VSLVSLPMEN FLFGVAGGKL VERIRSLSFK RIVHQEVSWF
101: DNPSNASGTI GARLSVDASN IRRLVGDSLA LIVRSSVTII AGFIIAMVAN WRLALVATVV LPLGGLQGFF QIKFLEGFSA DAKVKYEEAT QVAHDAVSSI
201: RTVASFCAEN RIMKAYYKKC EAPVRQGIRQ GIVSGLGFGI SFFVLYSTYA LCFYVGAKFM LDGKATFTEI FRVFFALLMA TIGVSQTSAM GSDSAKAKAS
301: ASSIFAMIDR ESKIDSSSDD GMVLANVAGE LELHHVCFSY PSRPDIQIFR NLSLRIPSGK MVALVGESGC GKSTVIALLE RFYDPDSGTV TLDGVDIKNL
401: KVGFLRQQMG LVSQEPVLFN DTVRANIAYG KEGDATEEEI VAAARAANAH QFISALPGGY DTCAGERGVQ LSGGQKQRVA IARAILKDPR ILLLDEATSA
501: LDAESERAVQ AALESVMVGR TTVVVAHRLS TIRGADVIAV LRDGEVVATG RHVELMAKKD GVYASLVELR MSSERAGDSK PS

Best Arabidopsis Sequence Match ( AT1G02520.1 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.