Factsheet for Os08t0564300-04

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0660200-01
Os11t0148300-01
Os12t0145500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	Os11t0148300-01	AT3G21640.1	14517332
AT2G36910.1	Os12t0145500-01	AT3G21640.1	14517332
AT2G36910.1	Os06t0660200-01	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G284900.1	Wheat	plasma membrane	79.17	85.39
TraesCS7D01G284100.1	Wheat	cytosol	83.93	82.04
TraesCS7B01G181700.1	Wheat	cytosol	83.41	81.94
Zm00001d031871_P001	Maize	cytosol	83.85	79.59
HORVU7Hr1G063020.3	Barley	cytosol	83.18	79.23
GSMUA_Achr4P12130_001	Banana	cytosol	75.15	74.98
AT2G36910.1	Thale cress	peroxisome	71.28	74.49
Solyc09g008240.2.1	Tomato	peroxisome	71.58	73.21
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	73.74	73.19
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	72.92	73.19
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	72.92	73.03
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	73.44	72.84
KRH32507	Soybean	cytosol, nucleus, plasma membrane	72.77	72.82
CDY46744	Canola	cytosol, peroxisome, plasma membrane	72.1	72.42
PGSC0003DMT400009924	Potato	peroxisome	71.8	72.39
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	72.1	72.37
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	71.95	72.11
CDX79704	Canola	plasma membrane	71.8	71.96
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	71.43	71.75
OQU80682	Sorghum	plasma membrane	79.99	69.76
Os01t0290700-01	Rice	cytosol, plasma membrane	6.85	62.16
Os01t0695800-01	Rice	plasma membrane	10.34	53.05
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	23.51	51.63
Os04t0459000-01	Rice	plasma membrane	47.84	51.07
Os05t0137200-01	Rice	plasma membrane	14.29	48.85
Os02t0693700-02	Rice	plasma membrane	45.09	47.94
Os02t0190300-01	Rice	plasma membrane	40.62	43.86
Os02t0190000-00	Rice	plasma membrane	40.4	43.68
Os03t0181750-00	Rice	plasma membrane	30.43	42.38
Os05t0548300-01	Rice	plasma membrane	17.93	41.41
Os02t0189800-00	Rice	mitochondrion	22.62	40.64
Os01t0534700-00	Rice	plasma membrane	33.33	40.51
Os01t0695700-00	Rice	plasma membrane	37.65	39.94
Os05t0548500-00	Rice	plasma membrane	36.98	39.44
Os04t0481700-01	Rice	plasma membrane	19.35	38.81
Os01t0533900-01	Rice	endoplasmic reticulum, vacuole	24.11	38.8
Os03t0280000-01	Rice	plasma membrane	39.29	37.42
Os02t0323000-01	Rice	cytosol, peroxisome	10.42	33.1
Os01t0975900-02	Rice	plasma membrane	5.06	26.98
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	8.26	19.04
Os01t0976000-01	Rice	nucleus	2.38	5.64

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:4346344	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:BAD12940.1	ProteinID:BAT06738.1	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008361	GO:GO:0009506	GO:GO:0009605	GO:GO:0009606
GO:GO:0009607	GO:GO:0009624	GO:GO:0009628	GO:GO:0009637	GO:GO:0009639	GO:GO:0009640
GO:GO:0009719	GO:GO:0009733	GO:GO:0009791	GO:GO:0009908	GO:GO:0009926	GO:GO:0009958
GO:GO:0009987	GO:GO:0010315	GO:GO:0010328	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0043481	GO:GO:0048443
GO:GO:0055085	GO:GO:0060919	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	EnsemblPlantsGene:Os08g0564300
EnsemblPlants:Os08t0564300-04	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF119	UniProt:Q7EZL2	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000023AEEB	RefSeq:XP_015650392.1	SEG:seg	:

Description

MULTIDRUG RESISTANCE 14ABC transporter-like domain containing protein. (Os08t0564300-01);Similar to P-glycoprotein 1. (Os08t0564300-02);Hypothetical conserved gene. (Os08t0564300-03);P-glycoprotein 1. (Os08t0564300-04);Similar to MDR-like ABC transporter. (Os08t0564300-05);Similar to MDR-like ABC transporter. (Os08t0564300-06)

Coordinates

chr8:+:28264482..28269919

Molecular Weight (calculated)

145204.0 Da

IEP (calculated)

8.601

GRAVY (calculated)

0.095

Length

1344 amino acids

Sequence
(BLAST)

0001: MEEEIKGRVV VLGADAAADP ELEAFHLPSA DQPPHSHLLH HHHSPQSHPQ PDAPAAAAPP PPAPLTPPPP KSPPPPPHIQ TTDLPPPKPL PPAPLRQLFS
0101: FADGLDYVLM TLGTLGALVH GCSLPVFLRF FADLVDSFGS HAAHPDTMLR LVVKYAFYFL VVGAAIWASS WAEISCWMWT GERQSTRMRI RYLHAALHQD
0201: VSFFDTDVRT SDVIHAINAD AVVVQDAISE KLGNLIHYLA TFVSGFVVGF TAAWQLALVT LAVVPLIAVI GGLSAAALAK LSSRSQDALS DASGIAEQAL
0301: AQIRIVQSFV GEERVMRAYS AALAVAQRIG YRSGFAKGIG LGGTYFTVFC CYALLLWYGG HLVRRAHTNG GLAIATMFSV MIGGLALGQS APSMAAFAKA
0401: RVAAAKIFRM MEHKPSMERE GGVELEAVTG RVELRDVEFS YPSRPDVGIL RGLSLSVPAG KTIALVGSSG SGKSTVVSLI ERFYEPNAGT ILLDGHDLRD
0501: LNLRWLRRQI GLVSQEPALF ATTIRENLLL GRDGATQEEL EEAARVANAH SFIVKLPDAY NTQVGERGLQ LSGGQKQRIA IARAMLRNPA ILLLDEATSA
0601: LDSESEKLVQ EALDRFMIGR TTLVIAHRLS TIRKADLVAV LQGGAISEVG THDELMARGD GTYARLIRMQ EQAHEAALVA ARRSSARPSS ARNSVSSPII
0701: TRNSSYGRSP YSRRLSDADF ITGLGLGVDS KQQQQQHYFR VQASSFWRLA KMNSPEWGYA LVASLGSMVC GSFSAIFAYV LSAVLSVYYA PDAAYMDRQI
0801: AKYCYLLIGM SSAALLFNTV QHLFWDTVGE NLTKRVRERM LAAVLRNEIA WFDMEDNSSA RIAARLALDA QNVRSAIGDR ISIIVQNSAL MLVACTAGFV
0901: LQWRLALVLL AVFPLVVAAT VLQKMFLKGF SGDLERAHAR ATQIAGEAVA NVRTVAAFGS EAKIVGLFEA NLAGPLRRCF WKGQIAGSGY GVAQFLLYAS
1001: YALGLWYAAW LVKHGVSDFS KTIRVFMVLM VSANGAAETL TLAPDFVKGG RAMQAVFEAM DRRTEIEPDD VDAAAVPERP RGEVELKHVD FAYPSRPEVQ
1101: VFRDLSLRAR AGRTLALVGA SGCGKSSVLA LVQRFYEPNS GRVLLDGRDL RKFNLRSLRR AMALVPQEPF LFAATIHDNI AYGREGATEA EVVEAATAAN
1201: AHKFISALPE GYGTLVGERG VQLSGGQRQR IAIARALVKQ APILLLDEAT SALDAESERS VQEALASSSG SGRTTIVVAH RLATVRNAHT IAVIDDGKVA
1301: EQGSHSHLLN HHPDGCYARM LQLQRLSHSH VAPGPSSSTT THGT

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.