Factsheet for Bra017216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra006834.1-P
Bra006895.1-P
Bra008105.1-P
Bra012823.1-P
Bra015983.1-P
Bra035648.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	Bra008105.1-P	AT1G73590.1	17237354
AT2G36910.1	Bra015983.1-P	AT1G73590.1	17237354
AT2G36910.1	Bra006895.1-P	AT3G21640.1	14517332
AT2G36910.1	Bra012823.1-P	AT3G21640.1	14517332
AT2G36910.1	Bra002763.1-P	AT5G57090.1	17237354
AT2G36910.1	Bra006834.1-P	AT5G57090.1	17237354
AT2G36910.1	Bra035648.1-P	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	95.07	95.0
AT2G36910.1	Thale cress	peroxisome	91.11	94.79
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	85.35	85.29
KRH32507	Soybean	cytosol, nucleus, plasma membrane	84.98	84.66
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	84.9	84.65
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	84.16	83.97
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.78	82.79
Solyc09g008240.2.1	Tomato	peroxisome	81.17	82.65
PGSC0003DMT400009924	Potato	peroxisome	82.06	82.37
TraesCS7A01G284900.1	Wheat	plasma membrane	72.94	78.33
GSMUA_Achr4P12130_001	Banana	cytosol	74.44	73.94
TraesCS7B01G181700.1	Wheat	cytosol	74.66	73.03
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	73.84	72.92
TraesCS7D01G284100.1	Wheat	cytosol	74.81	72.8
Os08t0564300-04	Rice	plasma membrane	71.75	71.43
HORVU7Hr1G063020.3	Barley	cytosol	75.04	71.16
Zm00001d031871_P001	Maize	cytosol	74.22	70.13
OQU80682	Sorghum	plasma membrane	72.2	62.69
Bra032855.1-P	Field mustard	cytosol	5.31	60.17
Bra025359.1-P	Field mustard	plasma membrane	49.1	52.48
Bra039042.1-P	Field mustard	plasma membrane	48.51	51.84
Bra013936.1-P	Field mustard	plasma membrane	45.96	49.84
Bra032856.1-P	Field mustard	plasma membrane	45.07	48.67
Bra019135.1-P	Field mustard	plasma membrane	45.07	48.59
Bra019907.1-P	Field mustard	plasma membrane	44.17	48.24
Bra012621.1-P	Field mustard	plasma membrane	41.7	44.75
Bra025326.1-P	Field mustard	plasma membrane	40.51	43.57
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	34.3	42.94
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.46	42.89
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.33	42.8
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.51	42.48
Bra003445.1-P	Field mustard	peroxisome	39.76	42.42
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	39.99	42.26
Bra004484.1-P	Field mustard	cytosol	40.43	42.13
Bra025331.1-P	Field mustard	plasma membrane	35.73	41.97
Bra040475.1-P	Field mustard	cytosol	40.06	41.65
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	37.59	40.53
Bra017539.1-P	Field mustard	plasma membrane	30.42	39.48
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	40.13	38.36
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	39.91	38.06
Bra005036.1-P	Field mustard	mitochondrion	39.84	37.86

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra017216	EnsemblPlants:Bra017216.1	EnsemblPlants:Bra017216.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M4DL35
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF384	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI0002544428	SEG:seg	:	:	:	:

Description

AT2G36910 (E=0.0) ATPGP1, PGP1, ABCB1 | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding

Coordinates

chrA04:+:15985460..15991120

Molecular Weight (calculated)

146676.0 Da

IEP (calculated)

7.492

GRAVY (calculated)

-0.015

Length

1338 amino acids

Sequence
(BLAST)

0001: MSQESVQTQE EEEIKSVEEQ WRLSEMQALE FLPEASSDNN NSRNSETELR EHPPEMENNG APPPPPPPEP KKPEIHGVAF KELFRFADGL DYALMAIGSV
0101: GAFVHGCSLP LFLRFFADLV NSFGSNANDV DKMMQEVLKY ALYFLVVGAA IWASSWAEIS CWMWTGERQT TKMRIKYLEA ALNQDIQFFD TEVRTSDVVS
0201: AINTDAVMVQ DAISEKLGNF IHYMATFASG FIVGFTAVWQ LALVTLAVVP LIAVIGGIHT TTLSKLSNKS QESLSQAGNI VEQTVVQIRV VMAFVGETRA
0301: SQAYSSALKT AQRLGYKTGL AKGMGLGATY FVVFCCYALL LWYGGYLVRH RLTNGGLAIS TMFAVMIGGL ALGQSAPSMA AFAKAKVAAA KIFRIIDHRP
0401: TIERNSESGV ELDSVTGLVE LRNVDFSYPS RPDVKILNDF TLSVPAGKTI ALVGSSGSGK STVVSLIERF YDPASGQVLL DGHDLKTLKL KWLRQQIGLV
0501: SQEPALFATS IRENILLGRP DADQVEIEEA ARVANAHSFI IKLPDGFDTQ VGERGLQLSG GQKQRIAIAR AMLKNPAILL LDEATSALDS ESEKLVQEAL
0601: DRFMIGRTTL IIAHRLSTIR KADLVAVLQQ GSVSEIGTHD ELFAKGENGV YSKLIKMQEA AHETAMNNAR KSSARQSSAR NSVSSPIMTR NSSYGRSPYS
0701: RRLSDFSTTD FTLSIDASSY PNYRHDKLPF KDQANSFVRL AKMNSPEWKY ALLGSIGSVV CGSLSAFFAY VLSAVLSIYY NPNHEYMIKQ IGKYCYLLIG
0801: LSSTALIFNT LQHSFWDIVG ENLTKRVREK MFTAVLKNEM AWFDQEENES ARISARLALD ANNVRSAIGD RISVIVQNTA LMLVACTAGF VLQWRLALVL
0901: VAVFPVVVAA TVLQKMFMTG FSGDLEAAHA KGTQLAGEAI ANVRTVAAFN SEAKIVRLYT ANLEPPLKRC FWKGQIAGIG YGIAQFCLYA SYALGLWYAS
1001: WLVKHGISDF SKTIRVFMVL MVSANGAAET LTLAPDFIKG GQAMRSVFEL LDRKTEIEPD DPDTTPVPDR LRGEVELKHI DFSYPSRPDI QVFRDLTLRA
1101: RAGKTLALVG PSGCGKSSVI SLVQRFYEPS SGRVMIDGKD IRKYNLKALR KHIAIVPQEP CLFGTTIQEN IAYGHECATE AEIIQAATLA SAHKFISALP
1201: DGYKTYVGER GVQLSGGQKQ RIAIARALVR KAEIMLLDEA TSALDAESER SVQEALDQAC SGRTSIVVAH RLSTIRNAHT IAVIDDGKVA EQGSHSQLLK
1301: NYSDGIYARM IQLQRFTHGQ VIGMTSGGSS RVKEGDDA

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.