Factsheet for Bra032855.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032856.1-P	Field mustard	plasma membrane	100.0	9.52
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	63.56	7.02
Os03t0181750-00	Rice	plasma membrane	55.08	6.74
Bra039042.1-P	Field mustard	plasma membrane	68.64	6.47
Bra025359.1-P	Field mustard	plasma membrane	68.64	6.47
Bra025331.1-P	Field mustard	plasma membrane	61.86	6.41
Bra019135.1-P	Field mustard	plasma membrane	65.25	6.2
Bra013936.1-P	Field mustard	plasma membrane	64.41	6.16
Bra025326.1-P	Field mustard	plasma membrane	62.71	5.95
Bra019907.1-P	Field mustard	plasma membrane	61.02	5.88
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	61.86	5.65
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	59.32	5.64
Bra012621.1-P	Field mustard	plasma membrane	59.32	5.61
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	58.47	5.61
Bra004484.1-P	Field mustard	cytosol	60.17	5.53
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	59.32	5.53
Bra040475.1-P	Field mustard	cytosol	60.17	5.52
Bra003445.1-P	Field mustard	peroxisome	58.47	5.5
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.32	5.49
TraesCS4B01G298100.1	Wheat	mitochondrion, plasma membrane	59.32	5.33
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	60.17	5.31
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	58.47	5.15
KRH06234	Soybean	peroxisome, plastid	61.02	4.75
TraesCS4A01G006900.1	Wheat	peroxisome	59.32	4.68
TraesCS4D01G296900.1	Wheat	peroxisome	59.32	4.67
Zm00001d004442_P001	Maize	plastid	58.47	4.55
KXG25805	Sorghum	peroxisome, plastid	59.32	4.52
PGSC0003DMT400058977	Potato	plastid	56.78	4.39
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	58.47	4.38
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	50.0	4.21
Bra005036.1-P	Field mustard	mitochondrion	49.15	4.12
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	47.46	4.0
Bra017539.1-P	Field mustard	plasma membrane	5.93	0.68
HORVU4Hr1G077060.1	Barley	mitochondrion, peroxisome, plastid	4.24	0.36
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra032855.1	EnsemblPlants:Bra032855.1-P	EnsemblPlantsGene:Bra032855	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	InterPro:ABC_transporter-like
InterPro:IPR003439	InterPro:P-loop_NTPase	PANTHER:PTHR24221	PANTHER:PTHR24221:SF235	PFAM:PF00005	SUPFAM:SSF52540
UniParc:UPI000254252D	UniProt:M4EVM2	MapMan:35.1	:	:	:

Description

AT1G27940 (E=4e-056) PGP13 | PGP13 (P-GLYCOPROTEIN 13); ATPase, coupled to transmembrane movement of substances

Coordinates

chrA09:+:12382684..12383040

Molecular Weight (calculated)

12869.7 Da

IEP (calculated)

10.280

GRAVY (calculated)

-0.261

Length

118 amino acids

Sequence
(BLAST)

001: MEEGYKTHVG EKGVQLSGGQ KQRVAIARAV LKNPSVLLLD EATSALDTTS EKLVQEALDK LMKGRTTVLV AHRLSTIRKA DTIAVLHKGK VVEKGSHREL
101: VSISNGHYKQ LTSLQEVV

Best Arabidopsis Sequence Match ( AT1G27940.1 )
(BLAST)

0001: MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG GLGACIHGAT LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG
0101: LVNFVSAWIG VSCWMQTGER QTARLRINYL KSILAKDITF FDTEARDSNL IFHISSDAIL VQDAIGDKTD HVLRYLSQFI AGFVIGFLSV WQLTLLTLGV
0201: VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV RTVYAFVGEE KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV
0301: RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN NNSESSQRLD EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK
0401: TFAFVGPSGS GKSTIISMVQ RFYEPNSGEI LLDGNDIKSL KLKWFREQLG LVSQEPALFA TTIASNILLG KENANMDQII EAAKAANADS FIKSLPNGYN
0501: TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL DAESEKIVQQ ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD
0601: YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE KTKNDDSKKD FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM
0701: GIAYVLTAFY SPFPNVIKRD VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG ERLTSRVRLS LFSAILSNEI GWFDLDENNT GSLTSILAAD ATLVRSALAD
0801: RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA SLTEQLFLKG FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA
0901: FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL IVTAFSVSET LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV
1001: KGDIEFRNVS FVYPTRPEID IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK KLALVQQEPA LFSTTIYENI
1101: KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG VQLSGGQKQR VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR
1201: LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL

Arabidopsis Description

ABCB13PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4]
SUBAcon: [peroxisome,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.