Factsheet for Bra040475.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48003	Canola	cytosol	92.39	99.75
Bra004484.1-P	Field mustard	cytosol	94.95	95.17
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	93.71	93.78
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	83.53	83.2
Os05t0137200-01	Rice	plasma membrane	22.77	74.55
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.44	73.86
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	62.86	73.15
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	72.49	73.12
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	72.73	73.01
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	71.56	72.75
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	72.42	72.7
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	72.65	72.65
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	71.02	71.24
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	70.63	70.52
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	66.05	70.13
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.36	69.37
GSMUA_Achr1P25070_001	Banana	plasma membrane	48.72	69.21
Bra003445.1-P	Field mustard	peroxisome	66.2	67.94
OQU77362	Sorghum	mitochondrion, plasma membrane	60.84	67.85
KXG32330	Sorghum	plastid	66.43	66.8
Solyc06g009290.2.1	Tomato	nucleus	72.18	66.36
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	65.89	66.35
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	64.18	64.78
TraesCS1A01G081300.1	Wheat	unclear	64.1	64.66
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	63.95	64.5
Bra012621.1-P	Field mustard	plasma membrane	62.32	64.31
HORVU1Hr1G017460.3	Barley	plasma membrane	63.87	64.07
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	65.73	63.37
GSMUA_Achr9P16700_001	Banana	plasma membrane	60.14	60.94
Bra032855.1-P	Field mustard	cytosol	5.52	60.17
Bra017539.1-P	Field mustard	plasma membrane	46.31	57.81
Bra025359.1-P	Field mustard	plasma membrane	45.38	46.65
Bra039042.1-P	Field mustard	plasma membrane	45.14	46.41
Bra019135.1-P	Field mustard	plasma membrane	42.11	43.67
Bra032856.1-P	Field mustard	plasma membrane	42.04	43.66
Bra013936.1-P	Field mustard	plasma membrane	41.8	43.6
Bra019907.1-P	Field mustard	plasma membrane	41.34	43.43
Bra025326.1-P	Field mustard	plasma membrane	40.64	42.04
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	34.5	41.53
Bra025331.1-P	Field mustard	plasma membrane	35.59	40.21
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.65	40.06
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.49	39.88
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	37.45	38.84
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	37.84	34.71
Bra005036.1-P	Field mustard	mitochondrion	37.92	34.66
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	37.68	34.64

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra040475	EnsemblPlants:Bra040475.1	EnsemblPlants:Bra040475.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M4FH97
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI000254481D	SEG:seg	:	:	:	:

Description

AT2G47000 (E=0.0) MDR4, PGP4, ABCB4, ATPGP4 | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase

Coordinates

chrA04:-:18944135..18948887

Molecular Weight (calculated)

138873.0 Da

IEP (calculated)

6.957

GRAVY (calculated)

0.119

Length

1287 amino acids

Sequence
(BLAST)

0001: MASESGLNGD GNIVEDVSET KRSREEDKEV KKTEKKEEHE KTKTVPFYKL FAFADSFDIL LMILGTLGSI GNGLGFPIMT VLFGDLIDAF GQNQNDSNVS
0101: DKVSKVALKF VWLGIGTFAA AFLQLSGWMI SGERQAARIR SMYLKTILRQ DIAFFDVDTN TGEVVGRMSG DTVLIQDAMG EKVGKAIQLL STFVGGFVIA
0201: FLKGWLLTLV MLSSIPLLVM AGAGLAIVIA KTASRGQTAY ANAAVVVEQT IGSIRTVASF TGEKQAINNY NKHLLTAYKA GVIEGGSTGL GLGTLFLVIF
0301: CSYALAVWYG GKLILDKGYT GGQVLNIIIS VLTGSMSLGQ ASPCLSAFAA GQAAAYKMFE TIERRPDIDS YSTNGKVLDD IKGDIELKDV YFTYPARPDE
0401: QIFHGFSLFI SSGTTVALVG QSGSGKSTVV SLIERFYDPQ AGEIIIDGVN LKEFQLKWIR SKIGLVSQEP VLFTSSIKDN IAYGKEDATI EEIKAAAELA
0501: NASKFVDKLP QGLDTMVGEH GTQLSGGQKQ RIAVARAILK DPRILLLDEA TSALDAESER VVQEALDRIM VNRTTVVVAH RLSTVRNADM IAVIHQGKIV
0601: EKGSHTELLK DPEGAYSQLI RLQEEKKGEE NPTDEQKMSS IESFKHSSLR KSSLGRSLSK GGSSRGNSSR HSFNMFGFPS GVEGNDVTQD QEEGTTEAKT
0701: KPKKVSIRRV AALNKPEIPV LILGAISAAA NGVILPLFGI LIASVIKAFF KPPKELKEDT SFWAIIFMAL GFASIIAYPA QTFFFAIAGC KLVKRIRSMC
0801: FEKVVHMEVG WFDESEHSSG TIGARLSADA AAIRGLVGDA LAQMVQNLSS ILAGLIIAFL ACWQLAFVVL AMLPLIALNG FLYMKFMQGF SADAKKMYGE
0901: ASQVANDAVG SIRTVASFCA EEKVMNMYTK KCEGPMKTGI RQGIVSGIGF GFSFFVLFAS YACSFYVGAR LVDDGKTTFD SVFRVFFALT MAAMAISQSS
1001: SLSPDSSKAD IAAASIFAII DRESKIDPSV ESGRVLDTVK GDIELRHVSF KYPARPDVQI FQDLCLSIRA GKTVALVGES GSGKSTVIAL LQRFYDPDSG
1101: EITLDGVEIK SLRLKWLRQQ TGLVSQEPIL FNETIRANIA YGKGGDASES EIVSAAELSN AHGFISGLQQ GYDTMVGERG IQLSGGQKQR VAIARAIVKD
1201: PKVLLLDEAT SALDAESERV VQDALDRVMV NRTTIVVAHR LSTIKNADVI AVVKNGVIVE KGKHESLINI KDGVYASLVQ LHLSAAS

Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)

0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS

Arabidopsis Description

ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.