Factsheet for Solyc06g009280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	91.54	97.36
Solyc06g009290.2.1	Tomato	nucleus	86.58	79.71
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.64	75.17
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	63.3	73.78
Os05t0137200-01	Rice	plasma membrane	22.42	73.54
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	73.08	73.48
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	72.77	73.17
CDX67881	Canola	cytosol	67.88	72.86
CDY25095	Canola	cytosol	68.11	72.8
CDY27510	Canola	cytosol	67.49	72.56
CDY48003	Canola	cytosol	66.64	72.06
CDX80072	Canola	cytosol	66.87	71.95
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	71.06	71.4
Bra004484.1-P	Field mustard	cytosol	70.52	70.79
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	70.05	70.66
CDX89963	Canola	cytosol, nucleus, plasma membrane	69.28	70.65
CDY51307	Canola	cytosol, peroxisome, plasma membrane	69.28	70.65
Bra040475.1-P	Field mustard	cytosol	70.52	70.63
CDY37776	Canola	cytosol, peroxisome, plasma membrane	68.04	70.56
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	70.29	70.45
CDY15432	Canola	cytosol	66.87	70.42
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	70.52	70.36
CDY15249	Canola	cytosol, peroxisome, plasma membrane	69.28	70.31
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	70.67	70.29
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	69.36	70.06
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	68.27	69.51
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	66.18	69.41
GSMUA_Achr1P25070_001	Banana	plasma membrane	48.49	68.98
OQU77362	Sorghum	mitochondrion, plasma membrane	61.6	68.8
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	65.63	68.78
CDY24379	Canola	plasma membrane	61.44	67.75
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	67.11	67.68
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.47	67.51
KXG32330	Sorghum	plastid	67.03	67.5
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	61.13	67.24
Bra003445.1-P	Field mustard	peroxisome	64.31	66.11
CDY58790	Canola	peroxisome	63.07	66.04
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	64.78	65.49
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	64.7	65.36
TraesCS1A01G081300.1	Wheat	unclear	64.7	65.36
CDY51560	Canola	peroxisome	62.92	64.83
HORVU1Hr1G017460.3	Barley	plasma membrane	64.39	64.69
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	66.33	64.04
Solyc02g071350.2.1	Tomato	plastid	62.06	63.34
Solyc12g098840.1.1	Tomato	peroxisome	61.83	62.27
GSMUA_Achr9P16700_001	Banana	plasma membrane	60.28	61.18
Solyc11g067300.1.1	Tomato	plasma membrane	59.19	60.56
Solyc03g005860.2.1	Tomato	plasma membrane	58.18	59.57
Solyc02g071340.1.1	Tomato	plasma membrane	58.18	59.38
Solyc02g087870.2.1	Tomato	plasma membrane	43.44	44.84
Solyc08g076720.2.1	Tomato	unclear	42.59	43.68
Solyc05g013890.1.1	Tomato	cytosol, plasma membrane	31.57	42.66
Solyc03g093650.2.1	Tomato	plasma membrane	39.64	41.65
Solyc09g008240.2.1	Tomato	peroxisome	42.36	41.55
Solyc07g064120.1.1	Tomato	plasma membrane	39.1	40.03
Solyc07g018130.1.1	Tomato	plasma membrane	38.63	39.06
Solyc06g072960.1.1	Tomato	peroxisome	31.11	39.01
Solyc04g010310.2.1	Tomato	plasma membrane	36.62	36.73

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	UniProt:K4C3V8	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	EnsemblPlantsGene:Solyc06g009280.1	EnsemblPlants:Solyc06g009280.1.1	TMHMM:TMhelix	UniParc:UPI0002766CD9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:3242454..3247733

Molecular Weight (calculated)

139278.0 Da

IEP (calculated)

7.837

GRAVY (calculated)

0.117

Length

1289 amino acids

Sequence
(BLAST)

0001: MGEGNDLNEN NTVPFYKLNE ASSEEQDNAG GKQDSNMIKQ IQTVPFYKLF SFADSTDIVL MIIGTIGAIG NGLSIPFMTV LFGELTDSFG QNQNNKDVLR
0101: LVSKISLKMV YLAVACGVAA FLQVACWMIS GERQASRIRS LYLKTILQQD IAFYDNETNT GEVVGRMSGD TVLIQDAMGE KVGKCVQLIS TFIGGFAIAF
0201: TQGWLLTFVM LSIIPLLIIS GGVMSLMLSR MASSGQEAYA KAAGVVEQTI GSIRIVASFT GEKKAIADYN ESLIKAYHSG AKEGLASGLG LGSLFALMYC
0301: SYALAIWYGA RLILEKGYTG GQVINIIVAV LTASMSLGQA SPCMSAFAAG QAAAFKMFET IERKPEIDAY DTNGKILNDI RGNIELNDVY FSYPARPDEK
0401: IFGGFSLFVP SGTTAALVGQ SGSGKSTVIS LIERFYDPQS GQVLIDGINL KDFQLKWIRG KIGLVSQEPV LFTASIKENI VYGKYDATPE EIRAAVKLAN
0501: AAKFLDKLPQ GLDTMVGEHG TQLSGGQKQR IAIARAILKD PRILLLDEAT SALDAESERV VQEALDRIMI NRTTVIVAHR LTTVRNADMI AVIHRGKVVE
0601: KGTHSELLKD PEGGYSQLIR LQEVNKETEK SGLDERGRLH KSMESGRQSS KRMSLLRSVS RSSSGVGNSS SRSLSISFSF PNGLSVSETA NEDRETGIQE
0701: VSGKPLNVPI SRLAYLNKPE APVIIIGTVA AIINGAILPI FGILLATVIK IFYKPPEELR KDSRFWAEMF VLLAAVTLIA FPARSYLFGI AGCKLVRRIR
0801: SLCFEKLVHM EVGWFDEPEN STGIIGARLS ADAAAVRGLV GDALAQMVQD SATALIGLAI AFEASWQLAL IVLVMIPLIG LSGYLQMKFM TGFSADAKTM
0901: YAEASQVAND AVGSIRTVAS FCAEEKVMET YRGKCEGPLK AGIKQGLISG MGFGVSNTLM FCVYATSFYA GALLVQNGKI TFADVYRVFF ALSTAAIGIS
1001: QSSSLAPDST KAKNAAASIF AILDRKSKVD PSDESGKTLE NVKGDIELRH VSFKYPTRPD VQILRDLCLT IRSGQTVALV GESGCGKSTV ISLLQRFYDP
1101: DSGQISLDGI EIQKFQVKWL RQQMGLVSQE PVLFNDTIRA NIAYGKEGNA IEAEVLAAAE LANAHKFISG LQQGYDTTVG ERGTQLSGGQ KQRVAIARAI
1201: LKNPKILLLD EATSALDAES ERIVQDALDR VVVNRTTVVV AHRLSTIKGA DVIAVFKNGV IVEKGKHDTL INIKDGFYSS LVALHTRST

Best Arabidopsis Sequence Match ( AT3G62150.3 )
(BLAST)

0001: MDSVIESEEG LKVDSPNRAD AETSNSKIHE EDEKELKTES DLKEEKKKTE KNKQEEDEKT KTVPFHKLFA FADSFDIILM ILGTIGAVGN GLGFPIMTIL
0101: FGDVIDVFGQ NQNSSDVSDK IAKVALKFVY LGLGTLVAAL LQVSGWMISG ERQAGRIRSL YLQTILRQDI AFFDVETNTG EVVGRMSGDT VLIQDAMGEK
0201: VGKAIQLVST FIGGFVIAFT EGWLLTLVMV SSIPLLVMSG AALAIVISKM ASRGQTSYAK AAVVVEQTVG SIRTVASFTG EKQAISNYNK HLVSAYRAGV
0301: FEGASTGLGL GTLNIVIFCT YALAVWYGGK MILEKGYTGG QVLIIIFAVL TGSMSLGQAS PCLSAFAAGQ AAAYKMFEAI KRKPEIDASD TTGKVLDDIR
0401: GDIELNNVNF SYPARPEEQI FRGFSLSISS GSTVALVGQS GSGKSTVVSL IERFYDPQSG EVRIDGINLK EFQLKWIRSK IGLVSQEPVL FTSSIKENIA
0501: YGKENATVEE IRKATELANA SKFIDKLPQG LDTMVGEHGT QLSGGQKQRI AVARAILKDP RILLLDEATS ALDAESERIV QEALDRIMVN RTTVVVAHRL
0601: STVRNADMIA VIHQGKIVEK GSHSELLRDP EGAYSQLIRL QEDTKQTEDS TDEQKLSMES MKRSSLRKSS LSRSLSKRSS SFSMFGFPAG IDTNNEAIPE
0701: KDIKVSTPIK EKKVSFFRVA ALNKPEIPML ILGSIAAVLN GVILPIFGIL ISSVIKAFFK PPEQLKSDTR FWAIIFMLLG VASMVVFPAQ TIFFSIAGCK
0801: LVQRIRSMCF EKVVRMEVGW FDETENSSGA IGARLSADAA TVRGLVGDAL AQTVQNLASV TAGLVIAFVA SWQLAFIVLA MLPLIGLNGY IYMKFMVGFS
0901: ADAKRMYEEA SQVANDAVGS IRTVASFCAE EKVMKMYKKK CEGPMRTGIR QGIVSGIGFG VSFFVLFSSY AASFYAGARL VDDGKTTFDS VFRVFFALTM
1001: AAVAISQSSS LSPDSSKASN AAASIFAVID RESKIDPSDE SGRVLDNVKG DIELRHISFK YPSRPDVQIF QDLCLSIRAG KTIALVGESG SGKSTVIALL
1101: QRFYDPDSGQ ITLDGVEIKT LQLKWLRQQT GLVSQEPVLF NETIRANIAY GKGGDATETE IVSAAELSNA HGFISGLQQG YDTMVGERGV QLSGGQKQRV
1201: AIARAIVKDP KVLLLDEATS ALDAESERVV QDALDRVMVN RTTVVVAHRL STIKNADVIA VVKNGVIVEK GKHETLINIK DGVYASLVQL HLSAST

Arabidopsis Description

ABCB21ABC transporter B family member 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.