Factsheet for PGSC0003DMT400018812

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	97.36	91.54
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	87.13	82.05
PGSC0003DMT400011703	Potato	cytosol	11.14	80.84
Os05t0137200-01	Rice	plasma membrane	23.68	73.03
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.08	70.16
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	72.52	68.56
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	72.28	68.33
GSMUA_Achr1P25070_001	Banana	plasma membrane	50.99	68.21
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	62.05	67.99
CDX67881	Canola	cytosol	67.08	67.69
CDY27510	Canola	cytosol	66.91	67.64
CDY25095	Canola	cytosol	67.24	67.58
CDY48003	Canola	cytosol	66.09	67.2
CDX80072	Canola	cytosol	66.25	67.03
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	70.3	66.41
Bra040475.1-P	Field mustard	cytosol	70.13	66.05
Bra004484.1-P	Field mustard	cytosol	69.88	65.97
CDY51307	Canola	cytosol, peroxisome, plasma membrane	68.73	65.9
CDY37776	Canola	cytosol, peroxisome, plasma membrane	67.57	65.89
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	69.31	65.73
CDY15432	Canola	cytosol	66.34	65.69
CDX89963	Canola	cytosol, nucleus, plasma membrane	68.48	65.66
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	69.55	65.55
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	69.8	65.48
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.89	65.44
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	69.88	65.35
CDY15249	Canola	cytosol, peroxisome, plasma membrane	68.4	65.28
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	67.82	64.93
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	65.51	64.61
OQU77362	Sorghum	mitochondrion, plasma membrane	61.39	64.47
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	64.69	63.74
CDY24379	Canola	plasma membrane	60.81	63.05
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	65.84	62.44
KXG32330	Sorghum	plastid	65.76	62.27
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.95	61.98
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	59.32	61.35
Bra003445.1-P	Field mustard	peroxisome	62.71	60.61
CDY58790	Canola	peroxisome	61.39	60.44
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	63.61	60.42
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	63.53	60.39
TraesCS1A01G081300.1	Wheat	unclear	63.53	60.34
HORVU1Hr1G017460.3	Barley	plasma membrane	63.12	59.63
CDY51560	Canola	peroxisome	61.22	59.31
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	65.02	59.03
PGSC0003DMT400007960	Potato	plasma membrane	61.22	58.8
PGSC0003DMT400011930	Potato	peroxisome	61.72	58.12
GSMUA_Achr9P16700_001	Banana	plasma membrane	59.24	56.54
PGSC0003DMT400034908	Potato	plasma membrane	58.42	56.24
PGSC0003DMT400019085	Potato	plasma membrane	57.59	53.94
PGSC0003DMT400003590	Potato	plasma membrane	43.48	42.19
PGSC0003DMT400045176	Potato	peroxisome	41.83	40.33
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	37.71	40.19
PGSC0003DMT400009924	Potato	peroxisome	43.32	39.38
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	39.44	38.12
PGSC0003DMT400049576	Potato	plasma membrane	39.19	37.73
PGSC0003DMT400013988	Potato	plasma membrane	37.13	36.7
PGSC0003DMT400069516	Potato	peroxisome	35.31	36.09
PGSC0003DMT400058977	Potato	plastid	40.35	32.02

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	UniProt:M1AB67	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
EnsemblPlantsGene:PGSC0003DMG400007294	PGSC:PGSC0003DMG400007294	EnsemblPlants:PGSC0003DMT400018812	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI000295DA9B	SEG:seg	:	:	:	:

Description

Multidrug/pheromone exporter, MDR family, ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400007294]

Coordinates

chr6:+:344414..349662

Molecular Weight (calculated)

130731.0 Da

IEP (calculated)

7.897

GRAVY (calculated)

0.123

Length

1212 amino acids

Sequence
(BLAST)

0001: MGEGNVLNEN NTVPFYKLNE VSSEEQDNAG GQQDSNMTKQ IQTVPFYKLF SFADSTDIVL MIIGTIGAIG NGLSLPIMTV LFGELTDSFG QNQNNKDVLR
0101: IVTKVGKCVQ LISTFIGGFV IAFTKGWILT FVMLSIIPLL IISGGVMSLI LSRMASSGQE AYAKAATVVE QTIGSIRIVA SFTGEKKAIA DYNESLIKAY
0201: HSGAKEGLAS GLGLGSLFAL MYCSYALAIW YGARLILEKG YTGGQVINII VAVLTASMSL GQTSPCMSAF AAGKAAAFKM FETIERKPEI DAYDTNGKIL
0301: NDIRGNIELN DVYFSYPARP DEKIFGGFSL FVPSGTTAAL VGQSGSGKST VISLIERFYD PQSGQVLIDG VNLKDFQLKW IRGKIGLVSQ EPVLFTASIK
0401: ENIVYGKYDA TPEEIRAAVE LANAAKFLDK LPQGLDTMVG EHGTQLSGGQ KQRIAIARAI LKDPRILLLD EATSALDAES ERVVQEALDK IMINRTTIIV
0501: AHRLTTVRNA DMIAVIHRGK VVEKGTHSEL LKDPEGGYSQ LIRLQEVNKE TEKSGLDERG RLDKSMESGR QSSKRMSLLR SVSRSSSGVG NSSSRSLSIS
0601: FSFPNGLSVS ETANEDTETG IQEVSGKPLN VPISRLAYLN KPEAPVIIIG TVAAIINGAI LPIFGVLFAT VIKIFYKPPE ELRKDSRFWA EMFVLLAAVT
0701: LIAFPARSYL FGIAGCKLVR RIRSMCFEKL VHMEVGWFDE PENSTGIIGA RLSADAAAVR GLVGDALAQM VQDSATAIIG LAVAFEASWQ LALIVLAMIP
0801: IIGLSGYLQM KFMTGFSADA KTMYAEASQV ANDAVGSIRT VASFCAEEKV METYRGKCEG PLKAGIKQGL ISGMGFGVSN TLMFCVYATS FYAGALLVQN
0901: GKITFADVYR VFFALSTAAI GISQSSSLAP DSTKAKNAAA SIFAILDRKS KVDPSDESGK TLDIVKGDIE LRHVSFKYPT RPDVQILRDL CLTIRSGQTV
1001: ALVGESGCGK STVISLLQRF YDPDSGQISL DGIEIQKFQV KWLRQQMGLV SQEPVLFNDT IRANIAYGKE GNAIEAEVLA AAELANAHKF ISGLQQGYDT
1101: TVGERGTQLS GGQKQRVAIA RAILKNPKIL LLDEATSALD AESERIVQDA LDRVVVNRTT VVVAHRLSTI KGADVIAVFK NGVIVEKGKH NTLINIKDGF
1201: YSSLVALHTR SS

Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)

0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS

Arabidopsis Description

ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.