Factsheet for AT2G47000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27510	Canola	cytosol	88.41	94.83
CDY48003	Canola	cytosol	87.33	94.21
Bra040475.1-P	Field mustard	cytosol	93.78	93.71
CDY37776	Canola	cytosol, peroxisome, plasma membrane	90.44	93.56
Bra004484.1-P	Field mustard	cytosol	93.08	93.22
CDX80072	Canola	cytosol	86.63	92.99
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	83.67	83.02
Os05t0137200-01	Rice	plasma membrane	22.78	74.55
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	73.64	74.1
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.42	73.79
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	73.41	73.63
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	73.33	73.56
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	62.99	73.24
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	72.08	72.03
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	68.51	71.68
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	67.96	71.06
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	70.76	70.93
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	70.45	70.29
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	65.55	69.55
GSMUA_Achr1P25070_001	Banana	plasma membrane	48.99	69.54
OQU77362	Sorghum	mitochondrion, plasma membrane	61.66	68.72
KXG32330	Sorghum	plastid	67.11	67.42
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	66.72	67.14
Solyc06g009290.2.1	Tomato	nucleus	71.7	65.86
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	64.62	65.18
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	64.39	64.89
TraesCS1A01G081300.1	Wheat	unclear	64.39	64.89
AT4G18050.2	Thale cress	plasma membrane	62.52	64.53
HORVU1Hr1G017460.3	Barley	plasma membrane	64.31	64.46
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	66.49	64.04
GSMUA_Achr9P16700_001	Banana	plasma membrane	60.19	60.94
AT5G46540.1	Thale cress	golgi	57.15	58.89
AT3G28860.1	Thale cress	plasma membrane	44.87	46.09
AT1G10680.1	Thale cress	plasma membrane	41.76	43.77
AT4G25960.1	Thale cress	plasma membrane	43.08	43.52
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	41.52	42.89
AT3G28345.1	Thale cress	plasma membrane	40.36	41.85
AT2G36910.1	Thale cress	peroxisome	41.84	41.84
AT3G28390.1	Thale cress	plasma membrane	38.72	40.65
AT3G28360.1	Thale cress	plasma membrane	37.71	39.5
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	38.26	34.94
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	37.87	34.61

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:819314	UniProt:A0A178VT74	InterPro:AAA+_ATPase
ProteinID:AAC34225.1	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:AEC10785.1
ProteinID:ANM61709.1	ProteinID:ANM61712.1	ArrayExpress:AT2G47000	EnsemblPlantsGene:AT2G47000	RefSeq:AT2G47000	TAIR:AT2G47000
RefSeq:AT2G47000-TAIR-G	EnsemblPlants:AT2G47000.1	TAIR:AT2G47000.1	Unigene:At.43921	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006855	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008559	GO:GO:0009506	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009734
GO:GO:0009735	GO:GO:0009926	GO:GO:0009987	GO:GO:0010315	GO:GO:0010328	GO:GO:0010329
GO:GO:0010540	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0016787	GO:GO:0016887
GO:GO:0030154	GO:GO:0040007	GO:GO:0042626	GO:GO:0042908	GO:GO:0048767	GO:GO:0055085
GO:GO:0060919	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	Symbol:MDR4	RefSeq:NP_001323911.1
RefSeq:NP_001323914.1	RefSeq:NP_182223.1	UniProt:O80725	ProteinID:OAP09650.1	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	PO:PO:0000230	PO:PO:0000256	PO:PO:0000293	PO:PO:0003021	PO:PO:0005052
PO:PO:0006036	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009025	PO:PO:0009029
PO:PO:0009031	PO:PO:0009046	PO:PO:0009047	PO:PO:0020100	PO:PO:0020123	PO:PO:0020131
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI00000A2D0B	SEG:seg	:

Description

ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]

Coordinates

chr2:-:19309643..19315343

Molecular Weight (calculated)

139036.0 Da

IEP (calculated)

6.485

GRAVY (calculated)

0.107

Length

1286 amino acids

Sequence
(BLAST)

0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.