Factsheet for AT3G28360.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G28390.1	Thale cress	plasma membrane	81.51	81.71
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	66.94	76.89
Bra025331.1-P	Field mustard	plasma membrane	71.01	76.56
AT3G28345.1	Thale cress	plasma membrane	75.0	74.27
VIT_14s0066g02320.t01	Wine grape	peroxisome	65.72	69.75
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	63.52	62.75
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	62.54	62.69
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	62.87	62.46
Os02t0190300-01	Rice	plasma membrane	63.19	62.33
Os02t0190000-00	Rice	plasma membrane	61.89	61.14
TraesCS4A01G370600.1	Wheat	plasma membrane	61.32	61.12
TraesCS7D01G068400.1	Wheat	plasma membrane	60.34	60.15
Os02t0189800-00	Rice	mitochondrion	36.24	59.49
EES05229	Sorghum	plasma membrane	58.39	57.64
Zm00001d016794_P001	Maize	plasma membrane	57.98	56.69
AT3G28860.1	Thale cress	plasma membrane	43.4	42.57
AT4G25960.1	Thale cress	plasma membrane	42.18	40.69
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	41.21	40.64
AT1G10680.1	Thale cress	plasma membrane	40.55	40.59
AT4G18050.2	Thale cress	plasma membrane	41.04	40.45
AT2G36910.1	Thale cress	peroxisome	42.35	40.44
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	39.74	39.67
AT5G46540.1	Thale cress	golgi	40.23	39.58
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	38.93	38.89
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	40.8	38.66
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	40.07	38.5
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	39.5	37.71
GSMUA_Achr1P18340_001	Banana	plasma membrane	56.76	33.32
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	36.97	32.27
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	36.97	32.24

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:822465	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:AEE77437.1	ArrayExpress:AT3G28360	EnsemblPlantsGene:AT3G28360	RefSeq:AT3G28360
TAIR:AT3G28360	RefSeq:AT3G28360-TAIR-G	EnsemblPlants:AT3G28360.1	TAIR:AT3G28360.1	EMBL:AY081330	Unigene:At.42811
ProteinID:BAB02852.1	EMBL:BT008368	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	RefSeq:NP_189477.4	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
Symbol:PGP16	PO:PO:0007611	PO:PO:0009046	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF381	UniProt:Q9LSJ8	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI00000A8854	SEG:seg	:	:	:

Description

ABCB16ABC transporter B family member 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSJ8]

Coordinates

chr3:-:10611024..10616361

Molecular Weight (calculated)

135924.0 Da

IEP (calculated)

8.184

GRAVY (calculated)

0.065

Length

1228 amino acids

Sequence
(BLAST)

0001: MKTWGSMRSI FMHADGVDWM LMGLGLIGAV GDGFITPILF FITAMLLNDF GSFSFNDETF MQPISKNALA MLYVACASWV ICFLEGYCWT RTGERQAAKM
0101: RERYLRAVLR QDVGYFDLHV TSTSDIITSV SSDSLVIQDF LSEKLPNILM NASAFVGSYI VGFMLLWRLT IVGFPFIILL LIPGLMYGRA LIGISRKIRE
0201: EYNEAGSIAE QAISSVRTVY AFVSEKKMIE KFSDALQGSV KLGLRQGLAK GIAIGSNGIV YAIWGFLTWY GSRMVMNYGY KGGTVSTVTV CVTFGGTALG
0301: QALSNLKYFS EAFVAGERIQ KMIKRVPDID SDNLNGHILE TIRGEVEFNN VKCKYPSRPE TLIFDDLCLK IPSGKTVALV GGSGSGKSTV ISLLQRFYDP
0401: NEGDILIDSV SINNMQVKWL RSQMGMVSQE PSLFATSIKE NILFGKEDAS FDEVVEAAKA SNAHNFISQF PHGYQTQVGE RGVHMSGGQK QRIAIARALI
0501: KSPIILLLDE ATSALDLESE RVVQEALDNA SVGRTTIVIA HRLSTIRNAD IICVLHNGCI VETGSHDKLM EIDGKYTSLV RLQQMKNEES CDNTSVGVKE
0601: GRVSSLRNDL DYNPRDLAHS MSSSIVTNLS DSIPQDKKPL VPSFKRLMAM NRPEWKHALC GCLSASLGGA VQPIYAYSSG LMISVFFLTN HEQIKENTRI
0701: YVLLFFGLAL FTFFTSISQQ YSFSYMGEYL TKRIREQMLS KILTFEVNWF DEEENSSGAI CSRLAKDANV VRSLVGERMS LLVQTISTVM VACTIGLVIA
0801: WRFTIVMISV QPVIIVCYYI QRVLLKNMSK KAIIAQDESS KLAAEAVSNI RTITTFSSQE RIMKLLERVQ EGPRRESARQ SWLAGIMLGT TQSLITCTSA
0901: LNFWYGGKLI ADGKMVSKAF FELFLIFKTT GRAIAEAGTM TTDLAKGSNS VDSVFTVLDR RTTIEPENPD GYILEKIKGQ ITFLNVDFAY PTRPNMVIFN
1001: NFSIEIHEGK STAIVGPSRS GKSTVIGLIE RFYDPLQGIV KIDGRDIRSY HLRSLRQHMS LVSQEPTLFA GTIRENIMYG RASNKIDESE IIEAGKTANA
1101: HEFITSLSDG YDTYCGDRGV QLSGGQKQRI AIARTILKNP SILLLDEATS ALDSQSERVV QDALEHVMVG KTSVVIAHRL STIQNCDTIA VLDKGKVVES
1201: GTHASLLAKG PTGSYFSLVS LQRKVRYV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.