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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 6
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX94395 Canola plasma membrane 88.92 91.73
Bra013936.1-P Field mustard plasma membrane 88.77 91.57
CDX89380 Canola plasma membrane 89.55 89.41
CDX92739 Canola plasma membrane 85.31 87.51
Bra019135.1-P Field mustard plasma membrane 85.23 87.43
CDY42770 Canola golgi, plasma membrane, vacuole 77.14 86.52
AT1G10680.1 Thale cress plasma membrane 79.5 82.48
VIT_02s0012g01660.t01 Wine grape plasma membrane 77.45 79.32
KRH74394 Soybean plasma membrane 75.96 77.61
KRH39563 Soybean peroxisome 75.73 77.43
Solyc08g076720.2.1 Tomato unclear 75.49 76.45
PGSC0003DMT400045176 Potato peroxisome 74.94 75.89
KRH45417 Soybean plasma membrane 74.31 75.44
EES05688 Sorghum plasma membrane 73.76 74.52
Os02t0693700-02 Rice plasma membrane 73.53 74.05
Zm00001d051514_P002 Maize mitochondrion 73.29 73.93
TraesCS6B01G291900.1 Wheat peroxisome 72.82 73.4
TraesCS6A01G264900.3 Wheat golgi 72.82 73.22
TraesCS6D01G250000.1 Wheat golgi 72.51 73.2
HORVU6Hr1G067170.3 Barley endoplasmic reticulum, vacuole 52.24 69.56
HORVU6Hr1G067200.1 Barley plastid 73.13 68.71
AT3G28860.1 Thale cress plasma membrane 49.73 50.56
AT1G27940.1 Thale cress peroxisome, plasma membrane, vacuole 48.31 49.4
AT2G36910.1 Thale cress peroxisome 48.31 47.82
AT4G01820.1 Thale cress peroxisome, plasma membrane, vacuole 43.44 45.0
AT4G01830.1 Thale cress golgi, plasma membrane, vacuole 43.36 44.88
AT4G18050.2 Thale cress plasma membrane 43.52 44.46
AT1G02520.1 Thale cress cytosol, peroxisome, plasma membrane 44.15 43.98
AT3G28390.1 Thale cress plasma membrane 41.56 43.18
AT2G47000.1 Thale cress cytosol, peroxisome, plasma membrane 43.52 43.08
AT3G62150.2 Thale cress cytosol, nucleus, plasma membrane 43.75 42.98
AT3G28345.1 Thale cress plasma membrane 41.32 42.42
AT3G28360.1 Thale cress plasma membrane 40.69 42.18
AT5G46540.1 Thale cress golgi 41.32 42.15
GSMUA_Achr4P17010_001 Banana peroxisome 35.59 41.0
AT2G39480.1 Thale cress cytosol, mitochondrion, plasma membrane 40.38 36.53
AT3G55320.1 Thale cress cytosol, peroxisome, plasma membrane 39.98 36.15
Protein Annotations
MapMan:24.1.3.1.1Gene3D:3.40.50.300EntrezGene:828702InterPro:AAA+_ATPaseInterPro:ABC1_TM_domInterPro:ABC1_TM_sf
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSProteinID:AEE85137.1EMBL:AK227086ArrayExpress:AT4G25960EnsemblPlantsGene:AT4G25960
RefSeq:AT4G25960TAIR:AT4G25960RefSeq:AT4G25960-TAIR-GEnsemblPlants:AT4G25960.1TAIR:AT4G25960.1EMBL:AY099656
Unigene:At.20799ProteinID:CAA71276.1ProteinID:CAB39661.1ProteinID:CAB79451.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626
GO:GO:0055085InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640RefSeq:NP_194326.2InterPro:P-loop_NTPase
PFAM:PF00005PFAM:PF00664Symbol:PGP2PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281ScanProsite:PS00211PFscan:PS50893PFscan:PS50929PANTHER:PTHR24221
PANTHER:PTHR24221:SF415UniProt:Q8LPK2SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelix
UniParc:UPI00005DC25EEMBL:Y10228SEG:seg:::
Description
ABCB2ABC transporter B family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK2]
Coordinates
chr4:+:13177356..13183692
Molecular Weight (calculated)
139918.0 Da
IEP (calculated)
9.325
GRAVY (calculated)
0.177
Length
1273 amino acids
Sequence
(BLAST)
0001: MYISLIFFLS NHFPPLISIP IFIFLSFSSP TNYTHLKLKK MQPSGDPAPE KEKEMTQPKV SLLKLFSFAD FYDCVLMTLG SVGACIHGAS VPIFFIFFGK
0101: LINIIGLAYL FPKQASHRVA KYSLDFVYLS VAILFSSWLE VACWMHTGER QAAKMRRAYL RSMLSQDISL FDTEASTGEV ISAITSDILV VQDALSEKVG
0201: NFLHYISRFI AGFAIGFTSV WQISLVTLSI VPLIALAGGI YAFVAIGLIA RVRKSYIKAG EIAEEVIGNV RTVQAFTGEE RAVRLYREAL ENTYKYGRKA
0301: GLTKGLGLGS MHCVLFLSWA LLVWFTSVVV HKDIADGGKS FTTMLNVVIA GLSLGQAAPD ISAFVRAKAA AYPIFKMIER NTVTKTSAKS GRKLGKVDGH
0401: IQFKDATFSY PSRPDVVIFD RLNLAIPAGK IVALVGGSGS GKSTVISLIE RFYEPISGAV LLDGNNISEL DIKWLRGQIG LVNQEPALFA TTIRENILYG
0501: KDDATAEEIT RAAKLSEAIS FINNLPEGFE TQVGERGIQL SGGQKQRIAI SRAIVKNPSI LLLDEATSAL DAESEKSVQE ALDRVMVGRT TVVVAHRLST
0601: VRNADIIAVV HEGKIVEFGN HENLISNPDG AYSSLLRLQE TASLQRNPSL NRTLSRPHSI KYSRELSRTR SSFCSERESV TRPDGADPSK KVKVTVGRLY
0701: SMIRPDWMYG VCGTICAFIA GSQMPLFALG VSQALVSYYS GWDETQKEIK KIAILFCCAS VITLIVYTIE HICFGTMGER LTLRVRENMF RAILKNEIGW
0801: FDEVDNTSSM LASRLESDAT LLKTIVVDRS TILLQNLGLV VTSFIIAFIL NWRLTLVVLA TYPLVISGHI SEKLFMQGYG GDLNKAYLKA NMLAGESVSN
0901: IRTVAAFCAE EKILELYSRE LLEPSKSSFR RGQIAGLFYG VSQFFIFSSY GLALWYGSTL MDKGLAGFKS VMKTFMVLIV TALAMGETLA LAPDLLKGNQ
1001: MVASVFEILD RKTQIVGETS EELNNVEGTI ELKGVHFSYP SRPDVVIFRD FDLIVRAGKS MALVGQSGSG KSSVISLILR FYDPTAGKVM IEGKDIKKLD
1101: LKALRKHIGL VQQEPALFAT TIYENILYGN EGASQSEVVE SAMLANAHSF ITSLPEGYST KVGERGVQMS GGQRQRIAIA RAILKNPAIL LLDEATSALD
1201: VESERVVQQA LDRLMANRTT VVVAHRLSTI KNADTISVLH GGKIVEQGSH RKLVLNKSGP YFKLISLQQQ QQP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.