CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051514_P002	Maize	mitochondrion	97.22	97.07
Os02t0693700-02	Rice	plasma membrane	92.06	91.77
TraesCS6A01G264900.3	Wheat	golgi	91.19	90.76
TraesCS6B01G291900.1	Wheat	peroxisome	90.95	90.74
TraesCS6D01G250000.1	Wheat	golgi	90.63	90.56
HORVU6Hr1G067170.3	Barley	endoplasmic reticulum, vacuole	65.87	86.82
HORVU6Hr1G067200.1	Barley	plastid	91.11	84.72
VIT_02s0012g01660.t01	Wine grape	plasma membrane	75.87	76.91
KRH74394	Soybean	plasma membrane	75.4	76.24
KRH39563	Soybean	peroxisome	75.32	76.22
CDX94395	Canola	plasma membrane	73.1	74.64
Bra013936.1-P	Field mustard	plasma membrane	72.94	74.47
AT1G10680.1	Thale cress	plasma membrane	71.9	73.84
AT4G25960.1	Thale cress	plasma membrane	74.52	73.76
Solyc08g076720.2.1	Tomato	unclear	73.57	73.75
PGSC0003DMT400045176	Potato	peroxisome	73.57	73.75
KRH45417	Soybean	plasma membrane	72.7	73.05
CDX93393	Canola	plasma membrane	70.79	72.82
CDY37953	Canola	plasma membrane	70.63	72.65
Bra019907.1-P	Field mustard	plasma membrane	70.32	72.33
CDX89380	Canola	plasma membrane	73.17	72.31
Bra019135.1-P	Field mustard	plasma membrane	71.03	72.12
CDX92739	Canola	plasma membrane	70.87	71.96
CDY42770	Canola	golgi, plasma membrane, vacuole	63.65	70.66
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	50.71	50.47
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	49.37	49.29
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	43.65	44.5
OQU77362	Sorghum	mitochondrion, plasma membrane	40.56	44.28
KXG32330	Sorghum	plastid	44.29	43.59
EES05229	Sorghum	plasma membrane	42.94	43.49
GSMUA_Achr4P17010_001	Banana	peroxisome	37.3	42.53
KXG33192	Sorghum	cytosol	42.46	42.16
EES01319	Sorghum	cytosol	41.98	41.52
KXG32655	Sorghum	peroxisome	42.54	41.52
KXG35311	Sorghum	plasma membrane	41.35	41.51
OQU79902	Sorghum	nucleus, peroxisome, plasma membrane	39.84	39.84
OQU80682	Sorghum	plasma membrane	47.94	39.2
OQU79903	Sorghum	peroxisome	39.21	38.99
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	42.3	38.04
EER92449	Sorghum	plasma membrane	41.75	37.23
KXG25805	Sorghum	peroxisome, plastid	39.05	31.78
OQU78384	Sorghum	plasma membrane	42.7	28.53

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:8073890	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	UniProt:C5Y0R2	EnsemblPlants:EES05688	ProteinID:EES05688	ProteinID:EES05688.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006464	GO:GO:0006810	GO:GO:0006950	GO:GO:0007049	GO:GO:0007154	GO:GO:0007165
GO:GO:0007346	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538	GO:GO:0023014
GO:GO:0031098	GO:GO:0032147	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF415	SMART:SM00382	EnsemblPlantsGene:SORBI_3004G274600	SUPFAM:SSF52540
SUPFAM:SSF90123	unigene:Sbi.11153	TMHMM:TMhelix	UniParc:UPI0001A85E5D	RefSeq:XP_002452712.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:61806550..61813471

Molecular Weight (calculated)

137931.0 Da

IEP (calculated)

9.800

GRAVY (calculated)

0.118

Length

1260 amino acids

Sequence
(BLAST)

0001: MSSSSDNGAG PEAGGKKKKK KAAEEEAAAA KVPFLKLFSF ADRWDCVLMA VGSLGACAHG ASVPVFFIFF GKLINIIGLA YLFPTTVSGR VAKYSLDFVY
0101: LGVVILFSSW TEVACWMHTG ERQAAKMRQA YLRAMLDQDI AVFDTEASTG EVINAITSDI LVVQDAISEK VGNFMHYISR FLAGFAIGFS QVWQISLVTL
0201: AIVPLIAIAG GTYAYVTIGL MARVRKSYVK AGEIAEEVIG NVRTVQAFVG EEKAVRSYRE ALLRTYKYGK RGGLAKGLGL GSMHSVLFLS WALLIWFTSV
0301: VVHKRISNGG ESFTTMLNVV IAGLSLGQAA PNISTFLRAR TAAFPIFQMI ERSTVNKASS KTGRTLPAVD GHIQFRNVHF SYPSRPDVVI LDRFSLDFPA
0401: GKIVALVGGS GSGKSTVVSL IERFYEPLSG SILLDGHDIK ELDVKWLRRQ IGLVNQEPAL FATSIRENIL YGKGDATMEE INHAAKLSEA ITFINHLPDR
0501: YETQVGERGI QLSGGQKQRI AISRAILKNP SILLLDEATS ALDAESEKSV QEALDRVMVG RTTVVIAHRL STIRNADTIA VVDGGRIVET GTHEQLMANP
0601: CSAYSSLIQL QEAAQLQHKP SLSDSASITR PLSFKYSREL SGRTSMGASF RSDKDSISRY GAGEAHDEVR KGKPVSMKKL YSMVRPDWFF GVSGTISAFV
0701: AGSQMPLFAL GVTQALVSYY MGWETTKLEV RKIAVLFCCG AVLTVVFHVI EHLSFGIMGE RLTLRVREKM FSAILRNEIG WFDDTSNTSA MLSSRLEADA
0801: TLVRTIVVDR STILLQNIGM IVTSLIIAFI LNWRITLVVL ATYPLMVSGH ISEKMFMKGY GGNLSKSYLK ANMLAAEAVS NIRTVAAFCS EEKVIKLYAD
0901: ELKEPSKRSF RRGQGAGLFY GVSQFFLFSS YALALWYGSV LMSKELASFK SVMKSFMVLI VTALAMGETL AMAPDIIKGN QMASSVFEIL DRKTDVRIDT
1001: GEDIKKVEGL IELRGVEFRY PARPDVTVFK GLDLLMKAGK SMALVGMSGS GKSTVLSLIL RFYDPIAGRV LIDGKDVKKL KLKSLRKHIG LVQQEPALFA
1101: TTIYDNILYG KDGATEAEVV EAAKLANAHS FISSLPEGYK TKVGERGVQL SGGQKQRIAI ARAIVKDPAI LLLDEATSAL DVESERVVQQ ALDRVMKNRT
1201: TVMVAHRLST IKNADVISVL QDGKIIEQGA HQHLIENKNG AYHKLVNLQQ QQQMQTQQSS

Best Arabidopsis Sequence Match ( AT4G25960.1 )
(BLAST)

0001: MYISLIFFLS NHFPPLISIP IFIFLSFSSP TNYTHLKLKK MQPSGDPAPE KEKEMTQPKV SLLKLFSFAD FYDCVLMTLG SVGACIHGAS VPIFFIFFGK
0101: LINIIGLAYL FPKQASHRVA KYSLDFVYLS VAILFSSWLE VACWMHTGER QAAKMRRAYL RSMLSQDISL FDTEASTGEV ISAITSDILV VQDALSEKVG
0201: NFLHYISRFI AGFAIGFTSV WQISLVTLSI VPLIALAGGI YAFVAIGLIA RVRKSYIKAG EIAEEVIGNV RTVQAFTGEE RAVRLYREAL ENTYKYGRKA
0301: GLTKGLGLGS MHCVLFLSWA LLVWFTSVVV HKDIADGGKS FTTMLNVVIA GLSLGQAAPD ISAFVRAKAA AYPIFKMIER NTVTKTSAKS GRKLGKVDGH
0401: IQFKDATFSY PSRPDVVIFD RLNLAIPAGK IVALVGGSGS GKSTVISLIE RFYEPISGAV LLDGNNISEL DIKWLRGQIG LVNQEPALFA TTIRENILYG
0501: KDDATAEEIT RAAKLSEAIS FINNLPEGFE TQVGERGIQL SGGQKQRIAI SRAIVKNPSI LLLDEATSAL DAESEKSVQE ALDRVMVGRT TVVVAHRLST
0601: VRNADIIAVV HEGKIVEFGN HENLISNPDG AYSSLLRLQE TASLQRNPSL NRTLSRPHSI KYSRELSRTR SSFCSERESV TRPDGADPSK KVKVTVGRLY
0701: SMIRPDWMYG VCGTICAFIA GSQMPLFALG VSQALVSYYS GWDETQKEIK KIAILFCCAS VITLIVYTIE HICFGTMGER LTLRVRENMF RAILKNEIGW
0801: FDEVDNTSSM LASRLESDAT LLKTIVVDRS TILLQNLGLV VTSFIIAFIL NWRLTLVVLA TYPLVISGHI SEKLFMQGYG GDLNKAYLKA NMLAGESVSN
0901: IRTVAAFCAE EKILELYSRE LLEPSKSSFR RGQIAGLFYG VSQFFIFSSY GLALWYGSTL MDKGLAGFKS VMKTFMVLIV TALAMGETLA LAPDLLKGNQ
1001: MVASVFEILD RKTQIVGETS EELNNVEGTI ELKGVHFSYP SRPDVVIFRD FDLIVRAGKS MALVGQSGSG KSSVISLILR FYDPTAGKVM IEGKDIKKLD
1101: LKALRKHIGL VQQEPALFAT TIYENILYGN EGASQSEVVE SAMLANAHSF ITSLPEGYST KVGERGVQMS GGQRQRIAIA RAILKNPAIL LLDEATSALD
1201: VESERVVQQA LDRLMANRTT VVVAHRLSTI KNADTISVLH GGKIVEQGSH RKLVLNKSGP YFKLISLQQQ QQP

Arabidopsis Description

ABCB2ABC transporter B family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.