CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88769
EES07974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	EES07974	AT3G21640.1	14517332
AT3G28860.1	EER88769	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002119_P006	Maize	cytosol	98.1	98.1
Zm00001d026426_P005	Maize	cytosol	98.58	98.04
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	45.66	94.44
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	93.92	93.62
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	93.52	93.52
TraesCS2B01G550700.2	Wheat	plasma membrane	92.65	93.32
TraesCS2D01G523100.2	Wheat	cytosol	93.6	93.23
GSMUA_Achr8P24160_001	Banana	plasma membrane	78.67	88.38
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.73	84.8
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	84.2	84.47
PGSC0003DMT400003590	Potato	plasma membrane	82.86	83.99
Solyc02g087870.2.1	Tomato	plasma membrane	82.78	83.91
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	82.46	83.59
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	82.15	83.2
Bra039042.1-P	Field mustard	plasma membrane	80.41	81.31
CDY20012	Canola	plasma membrane	80.33	81.17
CDY00109	Canola	plasma membrane	79.7	81.04
Bra025359.1-P	Field mustard	plasma membrane	79.94	80.83
CDY65012	Canola	plasma membrane	79.94	80.77
AT3G28860.1	Thale cress	plasma membrane	79.86	80.75
CDX86408	Canola	plasma membrane	78.67	80.52
GSMUA_Achr4P09980_001	Banana	plasma membrane	71.96	79.63
EES05688	Sorghum	plasma membrane	50.47	50.71
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	45.5	46.6
EES05229	Sorghum	plasma membrane	44.31	45.1
OQU77362	Sorghum	mitochondrion, plasma membrane	40.13	44.02
KXG32330	Sorghum	plastid	44.39	43.91
KXG33192	Sorghum	cytosol	43.92	43.81
KXG35311	Sorghum	plasma membrane	41.39	41.75
OQU80682	Sorghum	plasma membrane	50.32	41.34
EES01319	Sorghum	cytosol	41.07	40.82
KXG32655	Sorghum	peroxisome	41.07	40.28
OQU79902	Sorghum	nucleus, peroxisome, plasma membrane	39.89	40.08
EER92449	Sorghum	plasma membrane	43.44	38.92
OQU79903	Sorghum	peroxisome	38.15	38.12
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	42.18	38.12
KXG25805	Sorghum	peroxisome, plastid	40.13	32.82
OQU78384	Sorghum	plasma membrane	42.34	28.42

Protein Annotations

MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:8079561	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	UniProt:C5Y8Z4	EnsemblPlants:EES12952	ProteinID:EES12952
ProteinID:EES12952.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382	EnsemblPlantsGene:SORBI_3006G236700	SUPFAM:SSF52540
SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0001A87390	RefSeq:XP_002448624.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:57815633..57822442

Molecular Weight (calculated)

137356.0 Da

IEP (calculated)

8.370

GRAVY (calculated)

0.133

Length

1266 amino acids

Sequence
(BLAST)

0001: MAETAAADGK ADKVANGGGG GGDAAGEGKK RGDQAVAFHE LFSFADKWDL MLMAAGSLGA LAHGAAMPFF FLLFGDLING FGKNQTDLRT MTDEVAKYAL
0101: YFVYLGLVVC VSSYAEIACW MYTGERQVIA LRKAYLDAVL RQDVGFFDTD ARTGDIVFGV STDTLLVQDA IGEKVGNFMH YIATFLAGLV VGFVSAWRLA
0201: LLSVAVIPAI AFAGGLYAYT LTGLTSKSRE SYANAGVVAE QAIAQVRTVY SFVGESKALN SYSEAIQNTL KLGYKAGMAK GLGIGCTYGI ACMSWALVFW
0301: YAGVFIRNGQ TDGGKAFTAI FSAIVGGMSL GQAFSNLGAF SKGKIAGYKL LEVIRQKPSI VNDHKDGKWL AEVHGNIEFK EVTFSYPSRP DVIIFRDFSL
0401: FFPAGKTVAV VGGSGSGKST VVALIERFYD PNEGQVLLDN VDIKTLQLRW LRDQIGLVNQ EPALFATTIL ENILYGKPDA TIAEVEAAAT ASNAHGFISL
0501: LPNGYNTMVG ERGIQLSGGQ KQRIAIARAM LKNPKILLLD EATSALDADS ESIVQEALDR LMVGRTTVVV AHRLSTIRNV NMIAVIQQGQ VVETGTHDEL
0601: LAKGTSGAYA SLVRFQETAR NRDLAGASTR RSRSIHLTSS LSTKSLSLRS GSLRNLSYQY STGADGRIEM ISNADNDRKY PAPRGYFFKL LKLNAPEWPY
0701: AVLGAIGSVL SGFIGPTFAI VMGEMLDVFY YRDPNEMEKK TKLYVFIYIG TGIYAVVAYL VQHYFFSIMG ENLTTRVRRM MLSAILRNEV GWFDEEENNS
0801: SLVAARLAVD AADVKSAIAE RISVILQNMT SLMTSFVVGF IIEWRVAILI LATFPLLVLA NFAQQLSMKG FAGDTAKAHA KSSMVAGEGV SNIRTVAAFN
0901: AQSKILSLFS HELRVPEQQI LRRSQTSGLL FGLSQLCLYS SEALILWYGS HLVRSHGSTF SKVIKVFVVL VVTANSVAET VSLAPEIIRG GESIRSIFGI
1001: LNRATRIEPD DPESERVTTI RGDIELRHVD FSYPARPDIQ IFKDFNLKIH AGRSQALVGA SGSGKSTVIA LIERFYDPCG GKVAIDGKDI RTLNLKSLRL
1101: KIGLVQQEPV LFASSILENI AYGKEGATEE EVIEAAKTAN VHGFVSQLPD GYKTAVGERG MQLSGGQKQR IAIARAVLKD PAILLLDEAT SALDAESECV
1201: LQEALERLMK GRTTVLVAHR LSTIRGVDRI AVVQDGRIVE HGSHNDLLAR PEGAYSRLLQ LQHHRV

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.