CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02749
KRH19119
KRH23877
KRH39071
KRH39924
KRH41847
KRH48642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	KRH39071	AT1G73590.1	17237354
AT3G28860.1	KRH41847	AT1G73590.1	17237354
AT3G28860.1	KRH48642	AT1G73590.1	17237354
AT3G28860.1	KRH23877	AT3G21640.1	14517332
AT3G28860.1	KRH39924	AT3G21640.1	14517332
AT3G28860.1	KRH02749	AT5G57090.1	17237354
AT3G28860.1	KRH19119	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	99.28	99.2
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	94.56	94.48
PGSC0003DMT400003590	Potato	plasma membrane	93.43	93.43
Solyc02g087870.2.1	Tomato	plasma membrane	93.27	93.27
AT3G28860.1	Thale cress	plasma membrane	90.87	90.66
CDY65012	Canola	plasma membrane	90.47	90.18
Bra025359.1-P	Field mustard	plasma membrane	90.39	90.18
Bra039042.1-P	Field mustard	plasma membrane	90.31	90.1
CDX86408	Canola	plasma membrane	89.11	89.98
CDY20012	Canola	plasma membrane	90.23	89.94
CDY00109	Canola	plasma membrane	89.43	89.72
GSMUA_Achr8P24160_001	Banana	plasma membrane	80.86	89.62
Os04t0459000-01	Rice	plasma membrane	85.67	84.99
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	84.87	83.93
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	84.87	83.86
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	84.71	83.84
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	84.47	83.53
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	84.95	83.35
HORVU2Hr1G080200.1	Barley	plasma membrane	84.47	83.27
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	83.59	82.46
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	40.27	82.19
Zm00001d026426_P005	Maize	cytosol	83.11	81.54
Zm00001d002119_P006	Maize	cytosol	82.55	81.44
TraesCS2B01G550700.2	Wheat	plasma membrane	81.67	81.15
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	82.15	80.79
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	81.83	80.73
TraesCS2D01G523100.2	Wheat	cytosol	82.15	80.72
GSMUA_Achr4P09980_001	Banana	plasma membrane	73.5	80.24
KRH45417	Soybean	plasma membrane	51.48	51.28
KRH05968	Soybean	plasma membrane	51.08	51.04
KRH74394	Soybean	plasma membrane	50.84	50.96
KRH17450	Soybean	plasma membrane	51.0	50.96
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	54.44	50.67
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	54.28	50.63
KRH39563	Soybean	peroxisome	50.44	50.6
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	53.96	50.26
KRH32507	Soybean	cytosol, nucleus, plasma membrane	54.04	50.26
KRH11119	Soybean	plasma membrane	44.76	44.83
KRH21125	Soybean	plasma membrane	45.24	44.81
KRH02481	Soybean	plasma membrane	45.48	44.55
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	45.08	44.19
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	44.92	43.76
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	44.68	43.53
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	43.88	42.71
KRH02484	Soybean	plasma membrane	42.19	41.63
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	42.99	41.21
KRH53669	Soybean	plasma membrane	41.15	40.99
KRH19479	Soybean	plasma membrane	42.43	40.8
KRH19480	Soybean	plasma membrane	38.83	40.22
KRG92957	Soybean	nucleus	42.59	38.03
KRH36206	Soybean	cytosol, golgi, plastid	42.35	37.81
KRH70512	Soybean	extracellular	42.27	37.66
KRH01590	Soybean	mitochondrion	42.11	37.52
KRH06234	Soybean	peroxisome, plastid	41.63	34.32

Protein Annotations

EntrezGene:100797124	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02008076	EnsemblPlantsGene:GLYMA_13G063700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	UniProt:I1LWJ6	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
EnsemblPlants:KRH18485	ProteinID:KRH18485	ProteinID:KRH18485.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000233BC4F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:16244639..16254831

Molecular Weight (calculated)

136116.0 Da

IEP (calculated)

8.117

GRAVY (calculated)

0.121

Length

1249 amino acids

Sequence
(BLAST)

0001: MAEASEPKAL PEAEKKKEQT LPFYKLFSFA DKCDWMLMIS GSIGAIVHGS SMPVFFLLFG EMVNGFGKNQ MDLKKMTEEV SKYALYFVYL GLVVCISSYA
0101: EIACWMYTGE RQVSTLRKKY LEAVLKQDVG FFDTDARTGD IVFSVSTDTL LVQDAISEKV GNFIHYLSTF LAGLVVGFVS AWRLALLSVA VIPGIAFAGG
0201: LYAYTLTGLT SKSRESYANA GIIAEQAIAQ VRTVYSYVGE SKALNSYSDA IQNTLKLGYK AGMAKGLGLG CTYGIACMSW ALVFWYAGVF IRNGQTDGGK
0301: AFTAIFSAIV GGMSLGQSFS NLGAFSKGKA AGYKLMEIIN QKPTIVEDPS EGKCLAEVNG NIEFKDVTFS YPSRPDMFIF RNFSIFFPAG KTVAVVGGSG
0401: SGKSTVVSLI ERFYDPNEGQ VLLDNVDIKT LQLKWLRDQI GLVNQEPALF ATTILENILY GKPDATMAEV EAATSAANAH SFITLLPNGY NTQVGERGVQ
0501: LSGGQKQRIA IARAMLKNPK ILLLDEATSA LDAGSESIVQ EALDRLMVGR TTVVVAHRLS TIRNVDTIAV IQQGQVVETG THEELIAKAG TYASLIRFQE
0601: MVGNRDFSNP STRRTRSSRL SHSLSTKSLS LRSGSLRNLS YQYSTGADGR IEMISNAETD KKNPAPDGYF FRLLKMNAPE WPYSIMGAVG SVLSGFIGPT
0701: FAIVMSNMIE VFYFRNYASM ERKTKEYVFI YIGAGLYAVG AYLIQHYFFS IMGENLTTRV RRMMLAAILR NEVGWFDEEE HNSSLVAARL ATDAADVKSA
0801: IAERISVILQ NMTSLLTSFI VAFIVEWRVS LLILATFPLL VLANFAQQLS LKGFAGDTAK AHAKTSMIAG EGVSNIRTVA AFNAQNKMLS VFCHELRVPQ
0901: SQSLRRSQTS GFLFGLSQLA LYASEALILW YGAHLVSKGV STFSKVIKVF VVLVITANSV AETVSLAPEI IRGGEAVGSV FSILDRSTRI DPDDPDADPV
1001: ESLRGEIELR HVDFAYPSRP DVMVFKDLNL RIRAGQSQAL VGASGSGKSS VIALIERFYD PIAGKVMVDG KDIRKLNLKS LRLKIGLVQQ EPALFAASIF
1101: ENIAYGKEGA TEAEVIEAAR AANVHGFVSG LPEGYKTPVG ERGVQLSGGQ KQRIAIARAV LKDPTILLLD EATSALDAES ECVLQEALER LMRGRTTVLV
1201: AHRLSTIRGV DCIGVVQDGR IVEQGSHSEL VSRPEGAYSR LLQLQHHHI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.