CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02749
KRH19119
KRH23877
KRH39071
KRH39924
KRH41847
KRH48642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	KRH39071	AT1G73590.1	17237354
AT3G28860.1	KRH41847	AT1G73590.1	17237354
AT3G28860.1	KRH48642	AT1G73590.1	17237354
AT3G28860.1	KRH23877	AT3G21640.1	14517332
AT3G28860.1	KRH39924	AT3G21640.1	14517332
AT3G28860.1	KRH02749	AT5G57090.1	17237354
AT3G28860.1	KRH19119	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	99.2	99.28
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	94.0	94.0
PGSC0003DMT400003590	Potato	plasma membrane	92.88	92.95
Solyc02g087870.2.1	Tomato	plasma membrane	92.72	92.79
AT3G28860.1	Thale cress	plasma membrane	90.4	90.26
Bra039042.1-P	Field mustard	plasma membrane	90.0	89.86
CDY65012	Canola	plasma membrane	90.0	89.78
Bra025359.1-P	Field mustard	plasma membrane	89.92	89.78
CDY20012	Canola	plasma membrane	89.92	89.7
CDX86408	Canola	plasma membrane	88.64	89.57
CDY00109	Canola	plasma membrane	89.12	89.48
GSMUA_Achr8P24160_001	Banana	plasma membrane	80.48	89.26
Os04t0459000-01	Rice	plasma membrane	85.28	84.67
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	84.56	83.76
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	84.4	83.53
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	84.4	83.47
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	84.0	83.14
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	84.48	82.95
HORVU2Hr1G080200.1	Barley	plasma membrane	84.0	82.87
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	40.24	82.19
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	83.2	82.15
Zm00001d026426_P005	Maize	cytosol	82.72	81.23
Zm00001d002119_P006	Maize	cytosol	82.16	81.12
TraesCS2B01G550700.2	Wheat	plasma membrane	81.44	80.99
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	81.92	80.63
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	81.6	80.57
TraesCS2D01G523100.2	Wheat	cytosol	81.92	80.57
GSMUA_Achr4P09980_001	Banana	plasma membrane	73.2	79.98
KRH45417	Soybean	plasma membrane	51.44	51.28
KRH74394	Soybean	plasma membrane	50.64	50.8
KRH17450	Soybean	plasma membrane	50.8	50.8
KRH05968	Soybean	plasma membrane	50.8	50.8
KRH39563	Soybean	peroxisome	50.24	50.44
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	54.0	50.3
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	53.84	50.26
KRH32507	Soybean	cytosol, nucleus, plasma membrane	53.52	49.81
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	53.44	49.81
KRH21125	Soybean	plasma membrane	45.12	44.73
KRH11119	Soybean	plasma membrane	44.56	44.67
KRH02481	Soybean	plasma membrane	45.44	44.55
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	45.04	44.19
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	44.72	43.6
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	44.48	43.37
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	43.76	42.63
KRH02484	Soybean	plasma membrane	42.08	41.55
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	42.8	41.06
KRH19479	Soybean	plasma membrane	42.64	41.03
KRH53669	Soybean	plasma membrane	40.96	40.83
KRH19480	Soybean	plasma membrane	38.72	40.13
KRG92957	Soybean	nucleus	42.48	37.96
KRH36206	Soybean	cytosol, golgi, plastid	42.24	37.74
KRH70512	Soybean	extracellular	42.16	37.59
KRH01590	Soybean	mitochondrion	42.0	37.45
KRH06234	Soybean	peroxisome, plastid	41.44	34.19

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100780618	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02011580	EnsemblPlantsGene:GLYMA_19G021500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1N641	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	EnsemblPlants:KRG93519	ProteinID:KRG93519	ProteinID:KRG93519.1	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382
SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000233F5E5	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:2352336..2362829

Molecular Weight (calculated)

136214.0 Da

IEP (calculated)

8.121

GRAVY (calculated)

0.127

Length

1250 amino acids

Sequence
(BLAST)

0001: MAEAAEPNKA LPEAEKKKEQ TLPFYKLFSF ADKCDWMLMI SGSIGAIIHG SSMPVFFLLF GEMVNGFGKN QMNLKKMTEE VSKYALYFVY LGLVVCISSY
0101: AEIACWMYTG ERQVSTLRKK YLEAVLKQDV GFFDTDARTG DIVFSVSTDT LLVQDAISEK VGNFIHYLST FLAGLVVGFV SAWRLALLSV AVIPGIAFAG
0201: GLYAYTLTGL TSKSRESYAN AGIIAEQAIA QVRTVYSYVG ESKALNSYSD AIQNTLKLGY KAGMAKGLGL GCTYGIACMS WALVFWYAGV FIRNGQTDGG
0301: KAFTAIFSAI VGGMSLGQSF SNLGAFSKGK AAGYKLMEII NQKPTIVEDP SEGKCLAEVN GNIEFKDVTF SYPSRPDMFI FRNFSIFFPA GKTVAVVGGS
0401: GSGKSTVVSL IERFYDPNEG QVLLDNVDIK TLQLKWLRDQ IGLVNQEPAL FATTILENIL YGKPDATMAE VEAATSAANA HSFITLLPNG YNTQVGERGV
0501: QLSGGQKQRI AIARAMLKNP KILLLDEATS ALDAGSENIV QEALDRLMVG RTTVVVAHRL STIRNVDTIA VIQQGQVVET GAHEELIAKA GTYASLIRFQ
0601: EMVGNRDFSN PSTRRTRSSR LSHSLSTKSL SLRSGSLRNL SYQYSTGADG RIEMISNAET DKKNPAPDGY FFRLLKMNAP EWPYSIMGAV GSVLSGFIGP
0701: TFAIVMSNMI EVFYFSNYAS MERKTKEYVF IYIGAGLYAV GAYLIQHYFF SIMGENLTTR VRRMMLAAIL RNEVGWFDEE EHNSSLVAAR LATDAADVKS
0801: AIAERISVIL QNMTSLLTSF IVAFIVEWRV SLLILATFPL LVLANFAQQL SLKGFAGDTA KAHAKTSMIA GEGVSNIRTV AAFNAQNKML SVFCHELRVP
0901: QSQSLRRSLT SGFLFGLSQL ALYASEALIL WYGAHLVSKG VSTFSKVIKV FVVLVITANS VAETVSLAPE IIRGGEAVGS VFSILDRSTR IDPDDPDADP
1001: VESLRGEIEL RHVDFAYPSR PDVMVFKDFN LRIRAGQSQA LVGASGSGKS SVIALIERFY DPIAGKVMVD GKDIRKLNLK SLRLKIGLVQ QEPALFAASI
1101: FENIAYGKEG ATEAEVIEAA RAANVHGFVS GLPEGYKTPV GERGVQLSGG QKQRIAIARA VLKDPTILLL DEATSALDAE SECVLQEALE RLMRGRTTVL
1201: VAHRLSTIRG VDCIGVVQDG RIVEQGSHSE LVSRHEGAYS RLLQLQHHHI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.