Factsheet for Zm00001d002119_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004930_P001
Zm00001d046893_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	Zm00001d004930_P001	AT3G21640.1	14517332
AT3G28860.1	Zm00001d046893_P001	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	98.1	98.1
Zm00001d026426_P005	Maize	cytosol	98.26	97.72
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	45.34	93.79
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	93.21	92.91
TraesCS2B01G550700.2	Wheat	plasma membrane	92.02	92.68
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	92.65	92.65
TraesCS2D01G523100.2	Wheat	cytosol	92.73	92.37
GSMUA_Achr8P24160_001	Banana	plasma membrane	78.04	87.67
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	82.54	83.6
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	83.33	82.88
PGSC0003DMT400003590	Potato	plasma membrane	81.75	82.87
Solyc02g087870.2.1	Tomato	plasma membrane	81.6	82.71
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	81.44	82.55
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	81.12	82.16
Bra039042.1-P	Field mustard	plasma membrane	79.46	80.35
CDY20012	Canola	plasma membrane	79.38	80.21
CDY00109	Canola	plasma membrane	78.75	80.08
Bra025359.1-P	Field mustard	plasma membrane	78.99	79.87
CDY65012	Canola	plasma membrane	78.91	79.73
AT3G28860.1	Thale cress	plasma membrane	78.83	79.71
CDX86408	Canola	plasma membrane	77.8	79.63
GSMUA_Achr4P09980_001	Banana	plasma membrane	71.25	78.85
Zm00001d051514_P002	Maize	mitochondrion	49.68	49.84
Zm00001d031871_P001	Maize	cytosol	51.11	45.69
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	44.79	45.62
Zm00001d016794_P001	Maize	plasma membrane	44.71	45.06
Zm00001d005528_P001	Maize	plasma membrane	41.39	43.56
Zm00001d043762_P001	Maize	cytosol	43.36	43.13
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	43.44	43.04
Zm00001d009447_P002	Maize	plasma membrane	42.26	42.33
Zm00001d011644_P002	Maize	plasma membrane	42.73	42.1
Zm00001d009448_P001	Maize	cytosol, peroxisome, plasma membrane	41.86	41.93
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	43.92	41.65
Zm00001d044564_P008	Maize	cytosol, peroxisome, plasma membrane	42.02	40.21
Zm00001d043766_P005	Maize	cytosol	40.28	39.91
Zm00001d024600_P002	Maize	peroxisome	39.34	39.43
Zm00001d049565_P001	Maize	peroxisome	38.55	38.61
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	42.58	38.53
Zm00001d047780_P002	Maize	plasma membrane	42.18	37.79
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	41.0	36.94
Zm00001d004442_P001	Maize	plastid	40.28	33.62

Protein Annotations

EntrezGene:103645864	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	UniProt:A0A1D6DWQ9	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	ProteinID:ONM13113.1
ProteinID:ONM13114.1	ProteinID:ONM13118.1	ProteinID:ONM13121.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000221DBCE	EnsemblPlantsGene:Zm00001d002119	EnsemblPlants:Zm00001d002119_P006
EnsemblPlants:Zm00001d002119_T006	SEG:seg	:	:	:	:

Description

ABC transporter B family member 19

Coordinates

chr2:+:6125340..6132308

Molecular Weight (calculated)

137266.0 Da

IEP (calculated)

8.224

GRAVY (calculated)

0.130

Length

1266 amino acids

Sequence
(BLAST)

0001: MAESAAADGK SDKVANGGGG GGDAAGEGKK RGDQAVAFHE LFSFADKWDL MLMAAGSMGA LAHGAAMPFF FLLFGDLING FGKNQTDLRT MTDEVAKYAL
0101: YFVYLGLVVC VSSYAEIACW MYTGERQVIA LRKAYLDAVL RQDVGFFDTD ARTGDIVFGV STDTLLVQDG IGEKVGNFMH YIATFLAGLV VGFVSAWRLA
0201: LLSVAVIPAI AFAGGLYAYT LTGLTSKSRE SYANAGVVAE QAIGQVRTVY SFVGESKALN SYSEAIQNTL KLGYKAGMAK GLGIGCTYGI ACMSWALVFW
0301: YAGVFIRNGQ TDGGKAFTAI FSAIVGGMSL GQAFSNLGAF SKGKIAGYKL LEVIRQKPSI VNDHKDGKWL AEVHGNIEFK EVTFSYPSRP DVIIFRDFSL
0401: FFPAGKTVAV VGGSGSGKST VVALIERFYD PNEGQVLLDN VDIKTLQLRW LREQIGLVNQ EPALFATTIL ENILYGKPDA TIAEVEAAAT ASNAHSFISL
0501: LPNGYNTMAG ERGIQLSGGQ KQRIAIARAM LKNPKILLLD EATSALDADS ESIVQEALDR LMVGRTTVVV AHRLSTIRNV NMIAVIQQGQ VVETGTHDEL
0601: IAKGTSGAYA SLVRFQETAR NRDLGGASSR RSRSIHLTSS LSTKSLSLRS GSLKNLSYQY STGADGRIEM ISNADNDRKY PAPRGYFFKL LKLNAPEWPY
0701: AVLGAIGSVL SGFIGPTFAI VMGEMLDVFY YRDPNEIEKK TKLYVFIYIG TGIYAVVAYL VQHYFFSIMG ENLTTRVRRM MLSAILRNEV GWFDEEENNS
0801: SLVAARLGVD AADVKSAIAE RISVILQNMT SLMTSFVVGF IIEWRVAILI LATFPLLVLA NFAQQLSMKG FAGDTAKAHA RSSMVAGEAV SNIRTVAAFN
0901: AQSKILSLFS HELRVPEQQI LRRSQTSGLL FGLSQLCLYS SEALILWYGS HLVRSHGSTF SKVIKVFVVL VVTANSVAET VSLAPEIIRG GESIRSIFGI
1001: LNRATRIEPD DPESERVTTI RGDIELRHVD FSYPARPDIQ IFKDFNLKIQ AGRSQALVGA SGSGKSTVIA LIERFYDPCG GKVAIDGKDI RTLNLKSLRL
1101: KIGLVQQEPV LFASSILENI AYGKEGASEE EVVEAAKTAN VHGFVSQLPD GYRTAVGEQG MQLSGGQKQR IAIARAVLKD PAILLLDEAT SALDAESECV
1201: LQEALERLMK GRTTVLVAHR LSTIRGVDRI AVVQDGRVVE HGSHSDLLAR PEGAYLRLLQ LQHHRV

Best Arabidopsis Sequence Match ( AT1G27940.1 )
(BLAST)

0001: MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG GLGACIHGAT LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG
0101: LVNFVSAWIG VSCWMQTGER QTARLRINYL KSILAKDITF FDTEARDSNL IFHISSDAIL VQDAIGDKTD HVLRYLSQFI AGFVIGFLSV WQLTLLTLGV
0201: VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV RTVYAFVGEE KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV
0301: RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN NNSESSQRLD EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK
0401: TFAFVGPSGS GKSTIISMVQ RFYEPNSGEI LLDGNDIKSL KLKWFREQLG LVSQEPALFA TTIASNILLG KENANMDQII EAAKAANADS FIKSLPNGYN
0501: TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL DAESEKIVQQ ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD
0601: YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE KTKNDDSKKD FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM
0701: GIAYVLTAFY SPFPNVIKRD VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG ERLTSRVRLS LFSAILSNEI GWFDLDENNT GSLTSILAAD ATLVRSALAD
0801: RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA SLTEQLFLKG FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA
0901: FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL IVTAFSVSET LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV
1001: KGDIEFRNVS FVYPTRPEID IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK KLALVQQEPA LFSTTIYENI
1101: KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG VQLSGGQKQR VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR
1201: LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL

Arabidopsis Description

ABCB13PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4]
SUBAcon: [peroxisome,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.