Factsheet for Bra039042.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra006834.1-P
Bra006895.1-P
Bra008105.1-P
Bra012823.1-P
Bra015983.1-P
Bra035648.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	Bra008105.1-P	AT1G73590.1	17237354
AT3G28860.1	Bra015983.1-P	AT1G73590.1	17237354
AT3G28860.1	Bra006895.1-P	AT3G21640.1	14517332
AT3G28860.1	Bra012823.1-P	AT3G21640.1	14517332
AT3G28860.1	Bra002763.1-P	AT5G57090.1	17237354
AT3G28860.1	Bra006834.1-P	AT5G57090.1	17237354
AT3G28860.1	Bra035648.1-P	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20012	Canola	plasma membrane	99.44	99.36
CDY00109	Canola	plasma membrane	98.48	99.04
Bra025359.1-P	Field mustard	plasma membrane	97.04	97.04
AT3G28860.1	Thale cress	plasma membrane	96.17	96.17
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	90.1	90.31
PGSC0003DMT400003590	Potato	plasma membrane	90.02	90.23
Solyc02g087870.2.1	Tomato	plasma membrane	89.86	90.07
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	89.86	90.0
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	88.98	89.12
GSMUA_Achr8P24160_001	Banana	plasma membrane	77.8	86.42
Os04t0459000-01	Rice	plasma membrane	82.75	82.29
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	82.19	81.47
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	82.19	81.41
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	81.87	81.16
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	81.79	81.14
HORVU2Hr1G080200.1	Barley	plasma membrane	81.87	80.9
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	82.03	80.68
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	81.31	80.41
Zm00001d002119_P006	Maize	cytosol	80.35	79.46
TraesCS2B01G550700.2	Wheat	plasma membrane	79.63	79.32
Zm00001d026426_P005	Maize	cytosol	80.51	79.18
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	79.95	78.82
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	38.5	78.76
TraesCS2D01G523100.2	Wheat	cytosol	79.87	78.68
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	79.55	78.67
GSMUA_Achr4P09980_001	Banana	plasma membrane	71.17	77.88
Bra032855.1-P	Field mustard	cytosol	6.47	68.64
Bra013936.1-P	Field mustard	plasma membrane	50.24	50.97
Bra032856.1-P	Field mustard	plasma membrane	50.32	50.85
Bra019907.1-P	Field mustard	plasma membrane	49.36	50.45
Bra019135.1-P	Field mustard	plasma membrane	48.72	49.15
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.24	48.84
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	51.84	48.51
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	39.06	45.74
Bra025326.1-P	Field mustard	plasma membrane	45.21	45.5
Bra004484.1-P	Field mustard	cytosol	46.41	45.25
Bra012621.1-P	Field mustard	plasma membrane	44.97	45.15
Bra040475.1-P	Field mustard	cytosol	46.41	45.14
Bra025331.1-P	Field mustard	plasma membrane	40.66	44.69
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	45.85	44.43
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	44.97	44.12
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	43.21	43.95
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	43.93	43.44
Bra003445.1-P	Field mustard	peroxisome	43.45	43.38
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	40.97	41.34
Bra017539.1-P	Field mustard	plasma membrane	32.03	38.89
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	41.69	37.29
Bra005036.1-P	Field mustard	mitochondrion	41.77	37.14
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	41.45	36.99

Protein Annotations

Gene3D:1.20.1560.10	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra039042	EnsemblPlants:Bra039042.1	EnsemblPlants:Bra039042.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
UniProt:M4FD72	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0002541C11	SEG:seg	:	:	:

Description

AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter

Coordinates

chrA09:-:1451343..1458238

Molecular Weight (calculated)

136715.0 Da

IEP (calculated)

8.594

GRAVY (calculated)

0.131

Length

1252 amino acids

Sequence
(BLAST)

0001: MSETTADAKP VPPAEAEKKK EQSLPFFKLF SFADKFDHLL MITGSIGAII HGSSMPVFFL LFGEMVNGFG KNQMDLHQMT HEVSRYALYF VYLGLVVCVS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALSSY SEAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRSGTTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIVQ DPLDGKCLEQ VQGNIEFKDV TFSYPSRPDV IIFRNFSIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN NGEILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPNATI DEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ESDRKTRPPQ NYFYRLLKLN APEWPYSIMG AVGSVLSGFI
0701: GPTFAIVMSN MIEVFYYTDY VSMERKTKEY VFIYIGAGIY AVIAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLVA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIIEW RVSLLILCTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFSHELR
0901: VPQKRSFYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS QGKSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI KFRHVDFAYP SRPDVMVFTD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVIE AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPSVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGRH SELVSRPEGA YSRLLQLQTH RI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.