Factsheet for Bra000136.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07647	Canola	cytosol	99.5	99.64
Bra005036.1-P	Field mustard	mitochondrion	95.3	94.96
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	94.3	94.03
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	88.95	89.14
HORVU3Hr1G117250.1	Barley	mitochondrion	6.84	86.49
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	78.26	84.46
KRH01590	Soybean	mitochondrion	84.25	84.31
KRH70512	Soybean	extracellular	84.18	84.24
Solyc04g010310.2.1	Tomato	plasma membrane	77.05	84.12
KRG92957	Soybean	nucleus	83.82	84.06
KRH36206	Soybean	cytosol, golgi, plastid	83.61	83.85
GSMUA_Achr3P17720_001	Banana	peroxisome	74.34	83.31
TraesCS3A01G536300.1	Wheat	cytosol, plasma membrane, vacuole	78.05	78.16
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	77.98	78.09
TraesCS3D01G541700.1	Wheat	cytosol, plasma membrane, vacuole	78.05	77.83
TraesCS3B01G607600.1	Wheat	cytosol, plasma membrane, vacuole	77.76	77.38
Os03t0280000-01	Rice	plasma membrane	77.48	77.04
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	77.05	76.94
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	76.55	76.77
EER92449	Sorghum	plasma membrane	77.05	76.5
Zm00001d047780_P002	Maize	plasma membrane	77.05	76.5
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	76.69	76.37
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	76.62	76.3
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	76.48	76.15
Bra032855.1-P	Field mustard	cytosol	4.21	50.0
Bra032856.1-P	Field mustard	plasma membrane	36.71	41.57
Bra039042.1-P	Field mustard	plasma membrane	36.99	41.45
Bra019135.1-P	Field mustard	plasma membrane	36.64	41.42
Bra019907.1-P	Field mustard	plasma membrane	35.99	41.22
Bra025359.1-P	Field mustard	plasma membrane	36.78	41.21
Bra013936.1-P	Field mustard	plasma membrane	35.99	40.92
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	38.06	39.91
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	37.85	39.66
Bra012621.1-P	Field mustard	plasma membrane	34.21	38.49
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	29.29	38.45
Bra004484.1-P	Field mustard	cytosol	34.85	38.08
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.57	38.01
Bra025326.1-P	Field mustard	plasma membrane	33.57	37.86
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.85	37.85
Bra040475.1-P	Field mustard	cytosol	34.71	37.84
Bra025331.1-P	Field mustard	plasma membrane	30.51	37.58
Bra003445.1-P	Field mustard	peroxisome	33.57	37.56
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.86	37.45
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.64	37.28
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	31.43	35.54
Bra017539.1-P	Field mustard	plasma membrane	25.02	34.04

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	EnsemblPlantsGene:Bra000136	EnsemblPlants:Bra000136.1	EnsemblPlants:Bra000136.1-P	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M4C7F8
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24222
PANTHER:PTHR24222:SF21	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI00025401E8
SEG:seg	:	:	:	:	:

Description

AT2G39480 (E=0.0) PGP6 | PGP6 (P-GLYCOPROTEIN 6); ATPase, coupled to transmembrane movement of substances

Coordinates

chrA03:-:9480670..9486331

Molecular Weight (calculated)

154919.0 Da

IEP (calculated)

6.327

GRAVY (calculated)

0.075

Length

1403 amino acids

Sequence
(BLAST)

0001: MMVSRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDPSAE NGGGGGAGMA TQAEEEEEMD EPEEMEPPPA AVPFSQLFAC ADRFDWVLMV LGSVAAAAHG
0101: AALIVYLHYF AKIVQVLAYG TGSGRRGAED QFDRLVELSL TIVYIAGGVF ISGWIEVSCW ILTGERQTAV IRSKYVQVLL NQDMSFFDTY GNNGDIVSQV
0201: LSDVLLIQSA LSEKVGNYIH NMATFISGLV IGFVNCWEIA LITLATGPFI VAAGGVSNIF LHRLAENIQD AYAEAASIAE QAVSYIRTLY AFTNETLAKY
0301: SYATSLQATL RYGILISLVQ GLGLGFTYGL AICSCALQLW VGRFFVIHGR ANGGEIITAL FAVILSGLGL NQAATNFYSF DQGRIAAYRL FEMISRSSSG
0401: TNQEGTILSA VEGNIEFRNV YFSYLSRPEI PILSGFYLTV PAKKAVALVG RNGSGKSSII PLMERFYDPT LGEVLLDGEN VKNLKLEWLR SQIGLVTQEP
0501: ALLSLSIKEN IAYGRDATLD QIEEAAKKAR AHTFISSLEK GYETQVGKAG LTLTEEQKIK LSIARAVLLD PKILLLDEVT GGLDFEAERV VQEALDLLML
0601: GRSTIIIARR LSLIRNADYI AVMEEGQLLE MGTHDELINL GNLYAELLKC EEATKLPRRM PVRNYNDPAV FQAERDSSAG RGFQEHSSPK MAKSPSLQRG
0701: HNVFRPQDMC FNSEESHNDH SPAPDKVGEN GSSLDVAEKE PTIKRQDSFE MRLPELPKID IQCPQRQKSN GSDPESPILP LLISDPQNER SHSQTFSRPL
0801: GHSDDTKTNV KVESPSFWKL AQLSFPEWLY AVLGSIGAAI FGSFNPLLAY VIALVVTAYY NSKGSHLRKE VDKWCLIIAG MGLVTVFANF LQHFYFGIMG
0901: EKMTERVRRM MFSAMLRNEV GWYDEEENSP DTLSMRLAND ATFVRAAFSN RLSILIQDSF AVIVAILIGL LLGWRLALVA LATLPILTLS AIAQKLWLAG
1001: FSKGIQEMHR KASLVLEDAV RNIYTVVAFC AGNKVMELYR LQLQRILRQS FLHGMAIGLA FGFSQFLLFA CNALLLWFTA FSVKRGYMKL STALTEYMVF
1101: SFATFALVEP FGLAPYILKR RRSLASVFEI IDRVPTIEPD DTSALSPPNV YGSIELKNID FCYPTRPEVL VLSNFSLKVS GGQTLAVVGV SGSGKSTIIS
1201: LIERYYDPVA GQVLLDGRDL KSYNLRWLRS HMGLIQQEPI IFSTTIRENI IYARHNASEA EMKEAARIAN AHHFISSLAH GYDTHIGMRG VELTQGQKQR
1301: IAIARVVLKN APILLIDEAS SSIESESSRV VQEALDTLIM GNKTTILIAH RAAMMRHVDN IVVLNGGKIV EQGTHDTLSS KNGLYVRLMQ PHYGKGLRQH
1401: RLI

Best Arabidopsis Sequence Match ( AT2G39480.1 )
(BLAST)

0001: MMISRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDPGAE HGGTGTAAQA DDEEEMEEPE EMEPPPAAVP FSQLFACADR FDWVLMVFGS VAAAAHGTAL
0101: IVYLHYFAKI VQVLAFPTDS DHLISDDQFN RLLELSLTIV YIAGGVFISG WIEVSCWILT GERQTAVIRS KYVQVLLNQD MSFFDTYGNN GDIVSQVLSD
0201: VLLIQSALSE KVGNYIHNMA TFISGLIIGF VNCWEIALIT LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYVRTLYAFT NETLAKYSYA
0301: TSLQATLRYG ILISLVQGLG LGFTYGLAIC SCAMQLWIGR FFVIHHRANG GEIITALFAV ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSSSGTNQ
0401: EGIILSAVQG NIEFRNVYFS YLSRPEIPIL SGFYLTVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN LKLEWLRSQI GLVTQEPALL
0501: SLSIRENIAY GRDATLDQIE EAAKKAHAHT FISSLEKGYE TQVGKTGLTL TEEQKIKLSI ARAVLLDPTI LLLDEVTGGL DFEAERVVQE ALDLLMLGRS
0601: TIIIARRLSL IRNADYIAVM EEGQLLEMGT HDELINLGNL YAELLKCEEA TKLPRRMPVR NYNDSAAFQA ERDSSAGRGF QEPSSPKMAK SPSLQRGHNV
0701: FRSQELCFNS EESPNDHSPA PEKLGENGSS LDVGEKEPTI KRQDSFEMRL PELPKIDIQC PQRQKSNGSD PESPISPLLI SDPQNERSHS QTFSRPLGHS
0801: DDTSASVKVA KDGQHKEPPS FWRLAQLSFP EWLYAVLGSI GAAIFGSFNP LLAYVIALVV TTYYTSKGSH LREEVDKWCL IIACMGIVTV VANFLQHFYF
0901: GIMGEKMTER VRRMMFSAML RNEVGWYDEE ENSPDTLSMR LANDATFVRA AFSNRLSIFI QDSFAVIVAI LIGLLLGWRL ALVALATLPV LTLSAIAQKL
1001: WLAGFSKGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKVM ELYRLQLQRI LRQSFFHGMA IGFAFGFSQF LLFACNALLL WYTALSVDRR YMKLSTALTE
1101: YMVFSFATFA LVEPFGLAPY ILKRRRSLAS VFEIIDRVPT IEPDDTSALS PPNVYGSIEL KNIDFCYPTR PEVLVLSNFS LKVNGGQTVA VVGVSGSGKS
1201: TIISLIERYY DPVAGQVLLD GRDLKSYNLR WLRSHMGLIQ QEPIIFSTTI RENIIYARHN ASEAEMKEAA RIANAHHFIS SLPHGYDTHI GMRGVELTQG
1301: QKQRIAIARV VLKNAPILLI DEASSSIESE SSRVVQEALD TLIMGNKTTI LIAHRVAMMR HVDNIVVLNG GKIVEEGTHD CLAGKNGLYV RLMQPHFGKN
1401: LRRHQLI

Arabidopsis Description

ABCB6ABC transporter B family member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPT1]
SUBAcon: [mitochondrion,plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.