Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G541700.1 | Wheat | cytosol, plasma membrane, vacuole | 99.64 | 99.22 |
| TraesCS3B01G607600.1 | Wheat | cytosol, plasma membrane, vacuole | 99.36 | 98.72 |
| KXG34231 | Sorghum | cytosol, plasma membrane, vacuole | 93.93 | 93.93 |
| Zm00001d041947_P001 | Maize | cytosol, peroxisome, plasma membrane | 92.08 | 91.81 |
| HORVU3Hr1G117180.10 | Barley | plastid | 90.01 | 88.49 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 78.09 | 87.38 |
| Solyc04g010310.2.1 | Tomato | plasma membrane | 75.02 | 81.79 |
| VIT_13s0019g00310.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 75.66 | 81.54 |
| TraesCS4A01G101600.3 | Wheat | cytosol, plasma membrane, plastid | 80.94 | 80.48 |
| KRH70512 | Soybean | extracellular | 80.37 | 80.31 |
| KRG92957 | Soybean | nucleus | 80.01 | 80.13 |
| KRH36206 | Soybean | cytosol, golgi, plastid | 79.66 | 79.77 |
| KRH01590 | Soybean | mitochondrion | 79.73 | 79.67 |
| CDY24958 | Canola | mitochondrion, plasma membrane, plastid | 78.3 | 78.64 |
| CDY07647 | Canola | cytosol | 78.3 | 78.3 |
| VIT_06s0004g04100.t01 | Wine grape | cytosol | 78.52 | 78.29 |
| CDX76106 | Canola | cytosol, golgi, peroxisome | 78.09 | 78.14 |
| Bra014756.1-P | Field mustard | cytosol, golgi, peroxisome | 78.02 | 78.07 |
| Bra000136.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 78.16 | 78.05 |
| CDY65312 | Canola | cytosol | 77.87 | 77.98 |
| AT3G55320.1 | Thale cress | cytosol, peroxisome, plasma membrane | 78.37 | 77.98 |
| CDY20443 | Canola | cytosol, mitochondrion, plasma membrane | 77.94 | 77.94 |
| CDY53591 | Canola | cytosol, mitochondrion, plasma membrane | 78.16 | 77.77 |
| Bra005036.1-P | Field mustard | mitochondrion | 78.09 | 77.7 |
| AT2G39480.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 77.73 | 77.4 |
| TraesCS2A01G344300.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.97 | 42.12 |
| TraesCS7A01G284900.1 | Wheat | plasma membrane | 37.4 | 42.05 |
| TraesCS2A01G521400.2 | Wheat | cytosol, peroxisome, plasma membrane | 37.97 | 42.02 |
| TraesCS6A01G264900.3 | Wheat | golgi | 37.76 | 41.79 |
| TraesCS3A01G117600.3 | Wheat | peroxisome, plasma membrane | 32.19 | 38.81 |
| TraesCS3A01G257500.1 | Wheat | plasma membrane | 34.69 | 38.66 |
| TraesCS3A01G258200.1 | Wheat | peroxisome | 34.48 | 38.64 |
| TraesCS1A01G081300.1 | Wheat | unclear | 34.98 | 38.4 |
| TraesCS4A01G370600.1 | Wheat | plasma membrane | 33.4 | 37.99 |
| TraesCS2A01G009900.1 | Wheat | plasma membrane | 34.05 | 37.92 |
| TraesCS2A01G009600.1 | Wheat | plasma membrane | 33.83 | 37.83 |
| TraesCS5A01G495900.1 | Wheat | plasma membrane | 33.83 | 37.41 |
| TraesCS7A01G303200.1 | Wheat | cytosol | 20.84 | 37.34 |
| TraesCS1A01G368500.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.62 | 37.23 |
| TraesCS3A01G258400.3 | Wheat | peroxisome | 33.4 | 37.2 |
| TraesCS3A01G369700.1 | Wheat | peroxisome | 33.9 | 37.11 |
| TraesCS3A01G258000.1 | Wheat | mitochondrion | 34.4 | 36.35 |
| TraesCS7A01G303100.1 | Wheat | peroxisome | 31.05 | 34.41 |
| TraesCS2A01G323900.1 | Wheat | plasma membrane | 30.91 | 34.2 |
| TraesCS4A01G006900.1 | Wheat | peroxisome | 30.84 | 28.9 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 | InterPro:IPR011527 |
| InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | PFscan:PS50893 | PFscan:PS50929 |
| PANTHER:PTHR24222 | PANTHER:PTHR24222:SF21 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS3A01G536300 | EnsemblPlants:TraesCS3A01G536300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:-:747613289..747623619
Molecular Weight (calculated)
154784.0 Da
IEP (calculated)
6.978
GRAVY (calculated)
0.073
Length
1401 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVSRGLFGWS PPHVQPLTPV SETSEPPESP SPYAADAFGV GDPPRHPDGA GPEDGDEGAE GEDPEPPPAA VPFKRLFACA DRLDWALMAA GGAAAAAHGV
0101: ALVVYLHLFG RAINSLHGRH TDQLFRDIKQ HALYFLYIAI GVFFAGWIEV SCWILTGERQ TAVIRSKYVQ VLLNQDMSFF DTYGNNGDIV SQVLSDVLLI
0201: QSALSEKVGN YIHNMATFFG GLVIGLVNCW QIALLTLATG PFIVAAGGIS NIFLHRLAEN IQDAYGEAAS IAEQAILYIR TLYSFTNETL AKYSYATSLQ
0301: ATLRYGILIS LVQGLGLGFT YGLAICSCAL QLWVGRFLIL HGRANGGEIV VALFAIILSG LGLNQAATNF YSFEQGRIAA YRLYEMISRS TSTVNQDGRT
0401: LNSVQGNIEF RNVYFSYLSR PEIPILSGFY LTVPARKTVA LVGRNGSGKS SIIPLMERFY DPTLGEVLLD GENIKNLKLE WLRSQIGLVT QEPALLSLSI
0501: RENIAYGRSA TTDQIEEAAK TAHAHTFISS LEKGYETQVG RAGLSLTEEQ KIKLSIARAV LSNPSILLLD EVTGALDFEA EKAVQEALDV LMLGRSTIII
0601: ARRLSLIRNA DYIAVMEEGQ LVEMGTHEEL LNLDGLYAEL LKCEEAAKLP KRTPMRNYKE PSSFQIERDS SASHSFQESS SPIMSKSPSL QKTHGFLAFR
0701: NSDANPNSRE SPNIQSPPSE QMAEIRLPMV PSERAPSIKR QDSFEMKLPD LPKIDVPLHR QSSNTSDPES PISPLLTSDP KNERSHSKTF SRTLDMFDNF
0801: RSDPSKKHQM KAPSFWKLAE LSLTEYFYAL LGSAGAACFG SFNPLLAYTI SLILVAYYRI GVRDVHDEVN KYCSFIVGMG IITVLANFLQ HFYFGIMGEK
0901: MTERVRRMMF SAILRNEVGW FDDEENSADI LSMRLANDAT FVRAAFSNRL SIFIQDTSAI FVALLLGMLL EWRVALVALA TLPILVISAV AQKMWLSGFS
1001: RGIQEMHRKA SLVLEDAVRN IYTVVAFCAG NKIMELYRLQ LGSILTKSFV HGMGIGFAFG FSQFLLFACN ALLLWYTAVA VKAGHLSLLT ALKEYIVFSF
1101: ATFALVEPFG LAPYILKRRK SLTSVFEIID RVPKIDPDDA SGLKPPNVYG SIEFRSIDFC YPTRPEMMVL SNFSLKVNGG QTIAVVGVSG SGKSTIISLI
1201: ERFYDPTAGQ VLLDGRDLKL FNVRWLRSHM GLVPQDPVIF STTIRENIIY ARHNATESEM KEAARIANAH HFISSLPHGY DTHVGMRGVD LTPGQKQRIA
1301: IARVVLKNAP IVLLDEASSA IESESSRVVQ EALDTLIMGN KTTILIAHRA AMMKHVDNIV VLNGGKIVEQ GTHDSLVQMN GLYIKLMQPH FTKGFRQRRL
1401: I
0101: ALVVYLHLFG RAINSLHGRH TDQLFRDIKQ HALYFLYIAI GVFFAGWIEV SCWILTGERQ TAVIRSKYVQ VLLNQDMSFF DTYGNNGDIV SQVLSDVLLI
0201: QSALSEKVGN YIHNMATFFG GLVIGLVNCW QIALLTLATG PFIVAAGGIS NIFLHRLAEN IQDAYGEAAS IAEQAILYIR TLYSFTNETL AKYSYATSLQ
0301: ATLRYGILIS LVQGLGLGFT YGLAICSCAL QLWVGRFLIL HGRANGGEIV VALFAIILSG LGLNQAATNF YSFEQGRIAA YRLYEMISRS TSTVNQDGRT
0401: LNSVQGNIEF RNVYFSYLSR PEIPILSGFY LTVPARKTVA LVGRNGSGKS SIIPLMERFY DPTLGEVLLD GENIKNLKLE WLRSQIGLVT QEPALLSLSI
0501: RENIAYGRSA TTDQIEEAAK TAHAHTFISS LEKGYETQVG RAGLSLTEEQ KIKLSIARAV LSNPSILLLD EVTGALDFEA EKAVQEALDV LMLGRSTIII
0601: ARRLSLIRNA DYIAVMEEGQ LVEMGTHEEL LNLDGLYAEL LKCEEAAKLP KRTPMRNYKE PSSFQIERDS SASHSFQESS SPIMSKSPSL QKTHGFLAFR
0701: NSDANPNSRE SPNIQSPPSE QMAEIRLPMV PSERAPSIKR QDSFEMKLPD LPKIDVPLHR QSSNTSDPES PISPLLTSDP KNERSHSKTF SRTLDMFDNF
0801: RSDPSKKHQM KAPSFWKLAE LSLTEYFYAL LGSAGAACFG SFNPLLAYTI SLILVAYYRI GVRDVHDEVN KYCSFIVGMG IITVLANFLQ HFYFGIMGEK
0901: MTERVRRMMF SAILRNEVGW FDDEENSADI LSMRLANDAT FVRAAFSNRL SIFIQDTSAI FVALLLGMLL EWRVALVALA TLPILVISAV AQKMWLSGFS
1001: RGIQEMHRKA SLVLEDAVRN IYTVVAFCAG NKIMELYRLQ LGSILTKSFV HGMGIGFAFG FSQFLLFACN ALLLWYTAVA VKAGHLSLLT ALKEYIVFSF
1101: ATFALVEPFG LAPYILKRRK SLTSVFEIID RVPKIDPDDA SGLKPPNVYG SIEFRSIDFC YPTRPEMMVL SNFSLKVNGG QTIAVVGVSG SGKSTIISLI
1201: ERFYDPTAGQ VLLDGRDLKL FNVRWLRSHM GLVPQDPVIF STTIRENIIY ARHNATESEM KEAARIANAH HFISSLPHGY DTHVGMRGVD LTPGQKQRIA
1301: IARVVLKNAP IVLLDEASSA IESESSRVVQ EALDTLIMGN KTTILIAHRA AMMKHVDNIV VLNGGKIVEQ GTHDSLVQMN GLYIKLMQPH FTKGFRQRRL
1401: I
0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
Arabidopsis Description
ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.