Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G536300.1 | Wheat | cytosol, plasma membrane, vacuole | 99.22 | 99.64 |
| TraesCS3B01G607600.1 | Wheat | cytosol, plasma membrane, vacuole | 99.29 | 99.08 |
| KXG34231 | Sorghum | cytosol, plasma membrane, vacuole | 93.75 | 94.15 |
| Zm00001d041947_P001 | Maize | cytosol, peroxisome, plasma membrane | 91.9 | 92.03 |
| HORVU3Hr1G117180.10 | Barley | plastid | 89.91 | 88.77 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 77.83 | 87.46 |
| Solyc04g010310.2.1 | Tomato | plasma membrane | 74.7 | 81.79 |
| VIT_13s0019g00310.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 75.34 | 81.54 |
| TraesCS4D01G203900.2 | Wheat | cytosol, plasma membrane, plastid | 80.45 | 80.34 |
| KRH70512 | Soybean | extracellular | 80.03 | 80.31 |
| KRG92957 | Soybean | nucleus | 79.74 | 80.2 |
| KRH36206 | Soybean | cytosol, golgi, plastid | 79.39 | 79.84 |
| KRH01590 | Soybean | mitochondrion | 79.46 | 79.74 |
| CDY24958 | Canola | mitochondrion, plasma membrane, plastid | 77.97 | 78.64 |
| CDY07647 | Canola | cytosol | 77.97 | 78.3 |
| VIT_06s0004g04100.t01 | Wine grape | cytosol | 78.18 | 78.29 |
| CDX76106 | Canola | cytosol, golgi, peroxisome | 77.68 | 78.07 |
| AT3G55320.1 | Thale cress | cytosol, peroxisome, plasma membrane | 78.11 | 78.05 |
| Bra000136.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 77.83 | 78.05 |
| CDY20443 | Canola | cytosol, mitochondrion, plasma membrane | 77.68 | 78.02 |
| Bra014756.1-P | Field mustard | cytosol, golgi, peroxisome | 77.61 | 78.0 |
| CDY65312 | Canola | cytosol | 77.47 | 77.91 |
| CDY53591 | Canola | cytosol, mitochondrion, plasma membrane | 77.9 | 77.84 |
| Bra005036.1-P | Field mustard | mitochondrion | 77.83 | 77.77 |
| AT2G39480.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 77.47 | 77.47 |
| TraesCS2D01G322600.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.88 | 42.2 |
| TraesCS2D01G523100.2 | Wheat | cytosol | 37.81 | 41.86 |
| TraesCS6D01G250000.1 | Wheat | golgi | 37.38 | 41.71 |
| TraesCS6D01G107600.1 | Wheat | cytosol, plasma membrane, vacuole | 25.59 | 39.6 |
| TraesCS7D01G284100.1 | Wheat | cytosol | 38.52 | 39.42 |
| TraesCS3D01G257500.1 | Wheat | plasma membrane | 34.54 | 38.69 |
| TraesCS3D01G257900.1 | Wheat | peroxisome | 34.61 | 38.59 |
| TraesCS1D01G082900.2 | Wheat | cytosol, peroxisome, plasma membrane | 34.97 | 38.56 |
| TraesCS3D01G258100.1 | Wheat | plasma membrane | 34.12 | 38.4 |
| TraesCS7D01G068400.1 | Wheat | plasma membrane | 33.33 | 38.07 |
| TraesCS2D01G010500.1 | Wheat | plasma membrane | 33.76 | 37.76 |
| TraesCS2D01G010400.1 | Wheat | plasma membrane | 33.48 | 37.59 |
| TraesCS1D01G374300.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.62 | 37.27 |
| TraesCS3D01G258300.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.48 | 37.23 |
| TraesCS3D01G362700.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.83 | 37.22 |
| TraesCS3D01G258200.2 | Wheat | peroxisome | 32.76 | 36.62 |
| TraesCS7D01G298600.1 | Wheat | peroxisome | 31.63 | 35.37 |
| TraesCS7D01G298400.1 | Wheat | peroxisome | 31.06 | 34.57 |
| TraesCS2D01G339000.1 | Wheat | plasma membrane | 30.92 | 34.44 |
| TraesCS6D01G131900.1 | Wheat | plasma membrane | 30.21 | 33.86 |
| TraesCS4D01G296900.1 | Wheat | peroxisome | 30.85 | 28.93 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 | InterPro:IPR011527 |
| InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | PFscan:PS50893 | PFscan:PS50929 |
| PANTHER:PTHR24222 | PANTHER:PTHR24222:SF21 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS3D01G541700 | EnsemblPlants:TraesCS3D01G541700.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:612887215..612898253
Molecular Weight (calculated)
155210.0 Da
IEP (calculated)
6.856
GRAVY (calculated)
0.065
Length
1407 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVSRGLFGWS PPHVQPLTPV SETSEPPESP SPYAADAFGV GGPGDPPRHP DGAGPEDDGG DDDGADGEDP EPPPAAVPFK RLFACADRLD WALMAAGGAA
0101: AAAHGVALVV YLHLFGRAIN SLHGRHTDQL FRDIKQHALY FLYIAIGVFF AGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFFGGLVI GLVNCWQIAL LTLATGPFIV AAGGISNIFL HRLAENIQDA YGEAASIAEQ AILYIRTLYS FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWV GRFLILHGRA NGGEIVVALF AIILSGLGLN QAATNFYSFE QGRIAAYRLY EMISRSTSTV
0401: NQDGRTLNSV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP ARKTVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRSATTDQ IEEAAKTAHA HTFISSLEKG YETQVGRAGL SLTEEQKIKL SIARAVLSNP SILLLDEVTG ALDFEAEKAV QEALDVLMLG
0601: RSTIIIARRL SLIRNADYIA VMEEGQLVEM GTHEELLNLD GLYAELLKCE EAAKLPKRTP MRNYKEPSSF QIERDSSASH SFQESSSPIM SKSPSLQKTH
0701: GFLAFRNSDA NPNSRESPNI QSPPSEQMAE IRLPMVPSER APSIKRQDSF EMKLPDLPKI DVPLHRQSSN TSDPESPISP LLTSDPKNER SHSKTFSRTL
0801: DMFDNFRSDP SKKHQTKAPS FWKLAELSLT EYFYALLGSA GAACFGSFNP LLAYTISLIL VAYYRIGVRD VHDEVNKYCS FIVGMGIITV LANFLQHFYF
0901: GIMGEKMTER VRRMMFSAIL RNEVGWFDDE ENSADILSMR LANDATFVRA AFSNRLSIFI QDTSAIFVAL LLGMLLEWRV ALVALATLPI LVISAVAQKM
1001: WLSGFSRGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKIM ELYRLQLGSI LTKSFVHGMG IGFAFGFSQF LLFACNALLL WYTAVAVKAG HLSLVTALKE
1101: YIVFSFATFA LVEPFGLAPY ILKRRKSLTS VFEIIDRVPK IDPDDASGLK PPNVYGSIEF RSIDFCYPTR PEMMVLSNFS LKVNGGQTIA VVGVSGSGKS
1201: TIISLIERFY DPTAGQVLLD GRDLKLFNVR WLRSHMGLVP QDPVIFSTTI RENIIYARHN ATESEMKEAA RIANAHHFIS SLPHGYDTHV GMRGVDLTPG
1301: QKQRIAIARV VLKNAPIVLL DEASSAIESE SSRVVQEALD TLIMGNKTTI LIAHRAAMMK HVDNIVVLNG GKIVEQGTHD SLVQMNGLYI KLMQPHFTKG
1401: FRQRRLI
0101: AAAHGVALVV YLHLFGRAIN SLHGRHTDQL FRDIKQHALY FLYIAIGVFF AGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFFGGLVI GLVNCWQIAL LTLATGPFIV AAGGISNIFL HRLAENIQDA YGEAASIAEQ AILYIRTLYS FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWV GRFLILHGRA NGGEIVVALF AIILSGLGLN QAATNFYSFE QGRIAAYRLY EMISRSTSTV
0401: NQDGRTLNSV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP ARKTVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRSATTDQ IEEAAKTAHA HTFISSLEKG YETQVGRAGL SLTEEQKIKL SIARAVLSNP SILLLDEVTG ALDFEAEKAV QEALDVLMLG
0601: RSTIIIARRL SLIRNADYIA VMEEGQLVEM GTHEELLNLD GLYAELLKCE EAAKLPKRTP MRNYKEPSSF QIERDSSASH SFQESSSPIM SKSPSLQKTH
0701: GFLAFRNSDA NPNSRESPNI QSPPSEQMAE IRLPMVPSER APSIKRQDSF EMKLPDLPKI DVPLHRQSSN TSDPESPISP LLTSDPKNER SHSKTFSRTL
0801: DMFDNFRSDP SKKHQTKAPS FWKLAELSLT EYFYALLGSA GAACFGSFNP LLAYTISLIL VAYYRIGVRD VHDEVNKYCS FIVGMGIITV LANFLQHFYF
0901: GIMGEKMTER VRRMMFSAIL RNEVGWFDDE ENSADILSMR LANDATFVRA AFSNRLSIFI QDTSAIFVAL LLGMLLEWRV ALVALATLPI LVISAVAQKM
1001: WLSGFSRGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKIM ELYRLQLGSI LTKSFVHGMG IGFAFGFSQF LLFACNALLL WYTAVAVKAG HLSLVTALKE
1101: YIVFSFATFA LVEPFGLAPY ILKRRKSLTS VFEIIDRVPK IDPDDASGLK PPNVYGSIEF RSIDFCYPTR PEMMVLSNFS LKVNGGQTIA VVGVSGSGKS
1201: TIISLIERFY DPTAGQVLLD GRDLKLFNVR WLRSHMGLVP QDPVIFSTTI RENIIYARHN ATESEMKEAA RIANAHHFIS SLPHGYDTHV GMRGVDLTPG
1301: QKQRIAIARV VLKNAPIVLL DEASSAIESE SSRVVQEALD TLIMGNKTTI LIAHRAAMMK HVDNIVVLNG GKIVEQGTHD SLVQMNGLYI KLMQPHFTKG
1401: FRQRRLI
0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
Arabidopsis Description
ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.